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URGI-Anagen
TE_finder
Merge requests
!3
Initiate développement release 2.32
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Initiate développement release 2.32
dev
into
dev-2.32
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Merged
Hadi Quesneville
requested to merge
dev
into
dev-2.32
2 years ago
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dev-2.32
dev-2.32 (base)
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latest version
2dc700f2
1 commit,
2 years ago
2 files
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package_build/singularity/TEfinder2.31_recipes.def
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@@ -46,10 +46,7 @@ Usage:
%post
#essential stuff but minimal
apt update_seqtreatedfile
#for security fixe:
#apt upgrade -y
apt install -y wget bzip2
apt-get update && apt-get install wget -y
#install conda
cd /opt
@@ -69,11 +66,11 @@ Usage:
#install blast version 2.9.0
conda install -c bioconda blast=2.9.0
#install TE_finder version 2.3
0
apt
-y
install cmake
apt
-y
install g++
apt
-y
install libcppunit-dev
apt
-y
install git
#install TE_finder version 2.3
1
apt
-get
install cmake
-y
apt
-get
install g++
-y
apt
-get
install libcppunit-dev
-y
apt
-get
install git
-y
cd /opt
mkdir TE_finder
cd TE_finder
@@ -89,5 +86,5 @@ Usage:
#cleanup
conda clean -y --all
rm -f /opt/miniconda.sh
apt autoremove --purge
apt clean
apt
-get
autoremove --purge
apt
-get
clean
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