From 130221b83bea68e6e80230016cc98c2d68eeea10 Mon Sep 17 00:00:00 2001 From: Sandra Derozier <sandra.derozier@inrae.fr> Date: Mon, 7 Nov 2022 09:46:44 +0100 Subject: [PATCH 1/2] #8 - Update - November 2022 --- static/files/habitat.json | 37963 ++++++++++++++++++++++++---------- static/files/phenotype.json | 4606 +++-- static/files/use.json | 491 +- templates/release.html | 93 +- 4 files changed, 31001 insertions(+), 12152 deletions(-) diff --git a/static/files/habitat.json b/static/files/habitat.json index 1102a26..97a6fdb 100644 --- a/static/files/habitat.json +++ b/static/files/habitat.json @@ -1,24073 +1,40644 @@ -[{"value" : "OBT:000001", -"label" : "microbial habitat", +[{"extid" : "OBT:000001", +"value" : "OBT:000001", +"label" : "microbial habitat", "expanded" : true, "children" :[ - {"value" : "OBT:000003", + {"extid" : "OBT:000003", + "value" : "OBT:000003", "label" : "animal habitat", "children" :[ - {"value" : "OBT:000043", - "label" : "apiary" + {"extid" : "OBT:000043", + "value" : "OBT:000043", + "label" : "apiary", + "descendantnb" : 0, + "sublevelnb" : 0 } , - {"value" : "OBT:000059", - "label" : "breeding site" + {"extid" : "OBT:000059", + "value" : "OBT:000059", + "label" : "breeding site", + "descendantnb" : 0, + "sublevelnb" : 0 } , - {"value" : "OBT:000119", + {"extid" : "OBT:000119", + "value" : "OBT:000119", "label" : "nest", "children" :[ - {"value" : "OBT:000413", - "label" : "rodent nest" - } - ] + {"extid" : "OBT:000413", + "value" : "OBT:000413", + "label" : "rodent nest", + "descendantnb" : 0, + "sublevelnb" : 0 + } + ] , + "descendantnb" : 1, + "sublevelnb" : 1 } , - {"value" : "OBT:001183", + {"extid" : "OBT:001183", + "value" : "OBT:001183", "label" : "livestock habitat", "children" :[ - {"value" : "OBT:001485", - "label" : "chicken coop" + {"extid" : "OBT:001485", + "value" : "OBT:001485", + "label" : "chicken coop", + "descendantnb" : 0, + "sublevelnb" : 0 } , - {"value" : "OBT:001620", + {"extid" : "OBT:001620", + "value" : "OBT:001620", "label" : "litter", "children" :[ - {"value" : "OBT:002198", + {"extid" : "OBT:002198", + "value" : "OBT:002198", "label" : "poultry litter", "children" :[ - {"value" : "OBT:002562", - "label" : "poultry deep litter" + {"extid" : "OBT:002562", + "value" : "OBT:002562", + "label" : "poultry deep litter", + "descendantnb" : 0, + "sublevelnb" : 0 } - ] + ] , + "descendantnb" : 1, + "sublevelnb" : 1 } - ] + ] , + "descendantnb" : 2, + "sublevelnb" : 2 } , - {"value" : "OBT:001621", + {"extid" : "OBT:001621", + "value" : "OBT:001621", "label" : "livestock barn", "children" :[ - {"value" : "OBT:001922", - "label" : "calf barn" + {"extid" : "OBT:001922", + "value" : "OBT:001922", + "label" : "calf barn", + "descendantnb" : 0, + "sublevelnb" : 0 } , - {"value" : "OBT:001974", - "label" : "cow barn" + {"extid" : "OBT:001974", + "value" : "OBT:001974", + "label" : "cow barn", + "descendantnb" : 0, + "sublevelnb" : 0 } , - {"value" : "OBT:001987", - "label" : "dairy barn" + {"extid" : "OBT:001987", + "value" : "OBT:001987", + "label" : "dairy barn", + "descendantnb" : 0, + "sublevelnb" : 0 } - ] + ] , + "descendantnb" : 3, + "sublevelnb" : 1 } , - {"value" : "OBT:001727", + {"extid" : "OBT:001727", + "value" : "OBT:001727", "label" : "poultry house", "children" :[ - {"value" : "OBT:001949", - "label" : "chicken house" + {"extid" : "OBT:001949", + "value" : "OBT:001949", + "label" : "chicken house", + "descendantnb" : 0, + "sublevelnb" : 0 } - ] + ] , + "descendantnb" : 1, + "sublevelnb" : 1 } , - {"value" : "OBT:001786", - "label" : "stall" + {"extid" : "OBT:001786", + "value" : "OBT:001786", + "label" : "stall", + "descendantnb" : 0, + "sublevelnb" : 0 } , - {"value" : "OBT:001809", - "label" : "swine house" + {"extid" : "OBT:001809", + "value" : "OBT:001809", + "label" : "swine house", + "syns" : ["swine barn"], + "descendantnb" : 0, + "sublevelnb" : 0 } , - {"value" : "OBT:003765", - "label" : "agricultural fence" - } - ] + {"extid" : "OBT:003765", + "value" : "OBT:003765", + "label" : "agricultural fence", + "descendantnb" : 0, + "sublevelnb" : 0 + } + ] , + "descendantnb" : 13, + "sublevelnb" : 3 } - ] + ] , + "descendantnb" : 18, + "sublevelnb" : 4 } , - {"value" : "OBT:000004", + {"extid" : "OBT:000004", + "value" : "OBT:000004", "label" : "animal husbandry and agricultural habitat", "children" :[ - {"value" : "OBT:000032", + {"extid" : "OBT:000032", + "value" : "OBT:000032", "label" : "agricultural equipment", "children" :[ - {"value" : "OBT:000185", + {"extid" : "OBT:000185", + "value" : "OBT:000185", "label" : "agricultural tool", "children" :[ - {"value" : "OBT:000660", - "label" : "harvesting tool" + {"extid" : "OBT:000660", + "value" : "OBT:000660", + "label" : "harvesting tool", + "descendantnb" : 0, + "sublevelnb" : 0 } - ] + ] , + "descendantnb" : 1, + "sublevelnb" : 1 } , - {"value" : "OBT:000217", - "label" : "boot swab" + {"extid" : "OBT:000217", + "value" : "OBT:000217", + "label" : "boot swab", + "syns" : ["overshoe"], + "descendantnb" : 0, + "sublevelnb" : 0 } , - {"value" : "OBT:000224", - "label" : "cattle-dipping vat" + {"extid" : "OBT:000224", + "value" : "OBT:000224", + "label" : "cattle-dipping vat", + "descendantnb" : 0, + "sublevelnb" : 0 } , - {"value" : "OBT:000250", + {"extid" : "OBT:000250", + "value" : "OBT:000250", "label" : "dairy farm equipment", "children" :[ - {"value" : "OBT:000534", - "label" : "bulk tank" + {"extid" : "OBT:000534", + "value" : "OBT:000534", + "label" : "bulk tank", + "syns" : ["bulk milk cooling tank", "milk cooler"], + "descendantnb" : 0, + "sublevelnb" : 0 } , - {"value" : "OBT:000741", - "label" : "milking machine" + {"extid" : "OBT:000741", + "value" : "OBT:000741", + "label" : "milking machine", + "descendantnb" : 0, + "sublevelnb" : 0 } - ] + ] , + "descendantnb" : 2, + "sublevelnb" : 1 } , - {"value" : "OBT:000423", + {"extid" : "OBT:000423", + "value" : "OBT:000423", "label" : "silo", "children" :[ - {"value" : "OBT:000721", - "label" : "maize storage" - } - ] - } - ] + {"extid" : "OBT:000721", + "value" : "OBT:000721", + "label" : "maize storage", + "syns" : ["corn storage"], + "descendantnb" : 0, + "sublevelnb" : 0 + } + ] , + "descendantnb" : 1, + "sublevelnb" : 1 + } + ] , + "descendantnb" : 9, + "sublevelnb" : 2 } , - {"value" : "OBT:000033", + {"extid" : "OBT:000033", + "value" : "OBT:000033", "label" : "agricultural input", "children" :[ - {"value" : "OBT:000281", + {"extid" : "OBT:000281", + "value" : "OBT:000281", "label" : "fertilizer", "children" :[ - {"value" : "OBT:000516", - "label" : "biofertilizer" - } - ] - } - ] + {"extid" : "OBT:000516", + "value" : "OBT:000516", + "label" : "biofertilizer", + "descendantnb" : 0, + "sublevelnb" : 0 + } + ] , + "descendantnb" : 1, + "sublevelnb" : 1 + } + ] , + "descendantnb" : 2, + "sublevelnb" : 2 } , - {"value" : "OBT:000034", + {"extid" : "OBT:000034", + "value" : "OBT:000034", "label" : "agricultural product", "children" :[ - {"value" : "OBT:000246", - "label" : "crop" - } - ] + {"extid" : "OBT:000246", + "value" : "OBT:000246", + "label" : "crop", + "descendantnb" : 0, + "sublevelnb" : 0 + } + ] , + "descendantnb" : 1, + "sublevelnb" : 1 } , - {"value" : "OBT:000035", + {"extid" : "OBT:000035", + "value" : "OBT:000035", "label" : "agricultural species", "children" :[ - {"value" : "OBT:000184", + {"extid" : "OBT:000184", + "value" : "OBT:000184", "label" : "agricultural pest", "children" :[ - 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{"value" : "OBT:002892", - "label" : "barley plant" + {"extid" : "OBT:002892", + "value" : "OBT:002892", + "label" : "barley plant", + "descendantnb" : 0, + "sublevelnb" : 0 } , - {"value" : "OBT:002914", - "label" : "maize plant" + {"extid" : "OBT:002914", + "value" : "OBT:002914", + "label" : "maize plant", + "syns" : ["corn plant"], + "descendantnb" : 0, + "sublevelnb" : 0 } , - {"value" : "OBT:002919", - "label" : "oat plant" + {"extid" : "OBT:002919", + "value" : "OBT:002919", + "label" : "oat plant", + "descendantnb" : 0, + "sublevelnb" : 0 } , - {"value" : "OBT:002930", - "label" : "rice plant" + {"extid" : "OBT:002930", + "value" : "OBT:002930", + "label" : "rice plant", + "syns" : ["Oryza sativa"], + "descendantnb" : 0, + "sublevelnb" : 0 } , - {"value" : "OBT:002950", - "label" : "wheat plant" + {"extid" : "OBT:002950", + "value" : "OBT:002950", + "label" : "wheat plant", + "syns" : ["wheat"], + "descendantnb" : 0, + "sublevelnb" : 0 } - ] + ] , + "descendantnb" : 5, + "sublevelnb" : 1 } , - 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] + ] , + "descendantnb" : 1, + "sublevelnb" : 1 } , - {"value" : "OBT:000391", - "label" : "piezosensitive" + {"extid" : "OBT:000391", + "value" : "OBT:000391", + "label" : "piezosensitive", + "descendantnb" : 0, + "sublevelnb" : 0 } , - {"value" : "OBT:000392", - "label" : "piezotolerant" - } - ] + {"extid" : "OBT:000392", + "value" : "OBT:000392", + "label" : "piezotolerant", + "syns" : ["barotolerant "], + "descendantnb" : 0, + "sublevelnb" : 0 + } + ] , + "descendantnb" : 4, + "sublevelnb" : 2 } - ] + ] , + "descendantnb" : 130, + "sublevelnb" : 6 } -] +] , +"descendantnb" : 610, +"sublevelnb" : 7 } ] diff --git a/static/files/use.json b/static/files/use.json index 75ac6f2..ebc9688 100644 --- a/static/files/use.json +++ b/static/files/use.json @@ -1,299 +1,510 @@ -[{"value" : "OBT:004185", -"label" : "microbial use", +[{"extid" : "OBT:004185", +"value" : "OBT:004185", +"label" : "microbial use", "expanded" : true, "children" :[ - {"value" : "OBT:004191", + {"extid" : "OBT:004191", + "value" : "OBT:004191", "label" : "antimicrobial activity", "children" :[ - {"value" : "OBT:004203", - "label" : "antibacterial activity" + {"extid" : "OBT:004203", + "value" : "OBT:004203", + "label" : "antibacterial activity", + "descendantnb" : 0, + "sublevelnb" : 0 } , - {"value" : "OBT:004204", - "label" : "antifungal activity" + {"extid" : "OBT:004204", + "value" : "OBT:004204", + "label" : "antifungal activity", + "descendantnb" : 0, + "sublevelnb" : 0 } , - {"value" : "OBT:004205", - "label" : "antiviral activity" + {"extid" : "OBT:004205", + "value" : "OBT:004205", + "label" : "antiviral activity", + "descendantnb" : 0, + "sublevelnb" : 0 } , - {"value" : "OBT:004206", - "label" : "antiyeast activity" + {"extid" : "OBT:004206", + "value" : "OBT:004206", + "label" : "antiyeast activity", + "descendantnb" : 0, + "sublevelnb" : 0 } - ] + ] , + "descendantnb" : 4, + "sublevelnb" : 1 } , - {"value" : "OBT:004192", - "label" : "food product quality" + {"extid" : "OBT:004192", + "value" : "OBT:004192", + "label" : "food product quality", + "descendantnb" : 0, + "sublevelnb" : 0 } , - {"value" : "OBT:004193", + {"extid" : "OBT:004193", + "value" : "OBT:004193", "label" : "health property", "children" :[ - {"value" : "OBT:004199", - "label" : "GRAS" + {"extid" : "OBT:004199", + "value" : "OBT:004199", + "label" : "GRAS", + "descendantnb" : 0, + "sublevelnb" : 0 } , - {"value" : "OBT:004200", - "label" : "QPS" + {"extid" : "OBT:004200", + "value" : "OBT:004200", + "label" : "QPS", + "syns" : ["qualified presumption of safety"], + "descendantnb" : 0, + "sublevelnb" : 0 } , - {"value" : "OBT:004209", - "label" : "beneficial properties for health" + {"extid" : "OBT:004209", + "value" : "OBT:004209", + "label" : "beneficial properties for health", + "descendantnb" : 0, + "sublevelnb" : 0 } , - {"value" : "OBT:004214", - "label" : "food grade" + {"extid" : "OBT:004214", + "value" : "OBT:004214", + "label" : "food grade", + "descendantnb" : 0, + "sublevelnb" : 0 } , - {"value" : "OBT:004215", - "label" : "health risk" + {"extid" : "OBT:004215", + "value" : "OBT:004215", + "label" : "health risk", + "descendantnb" : 0, + "sublevelnb" : 0 } , - {"value" : "OBT:004222", - "label" : "probiotic capacity" + {"extid" : "OBT:004222", + "value" : "OBT:004222", + "label" : "probiotic capacity", + "descendantnb" : 0, + "sublevelnb" : 0 } - ] + ] , + "descendantnb" : 6, + "sublevelnb" : 1 } , - {"value" : "OBT:004194", + {"extid" : "OBT:004194", + "value" : "OBT:004194", "label" : "metabolic activity", "children" :[ - {"value" : "OBT:004201", - "label" : "acidification activity", + {"extid" : "OBT:001105", + "value" : "OBT:001105", + "label" : "fermentative", + "syns" : ["fermentation ability", "fermentation capacity"], "children" :[ - {"value" : "OBT:004230", - "label" : "acidification" + {"extid" : "OBT:004216", + "value" : "OBT:004216", + "label" : "heterofermentative", + "syns" : ["heterolactic"], + "children" :[ + + {"extid" : "OBT:004236", + "value" : "OBT:004236", + "label" : "facultative heterofermentative", + "descendantnb" : 0, + "sublevelnb" : 0 + } + , + {"extid" : "OBT:004239", + "value" : "OBT:004239", + "label" : "obligate heterofermentative", + "descendantnb" : 0, + "sublevelnb" : 0 + } + ] , + "descendantnb" : 2, + "sublevelnb" : 1 } , - {"value" : "OBT:004234", - "label" : "deacidification" + {"extid" : "OBT:004217", + "value" : "OBT:004217", + "label" : "homofermentative", + "syns" : ["homolactic"], + "descendantnb" : 0, + "sublevelnb" : 0 } - ] + ] , + "descendantnb" : 4, + "sublevelnb" : 2 } , - {"value" : "OBT:004202", - "label" : "amination activity", + {"extid" : "OBT:004201", + "value" : "OBT:004201", + "label" : "acidification activity", "children" :[ - {"value" : "OBT:004235", - "label" : "deamination activity" + {"extid" : "OBT:004230", + "value" : "OBT:004230", + "label" : "acidification", + "descendantnb" : 0, + "sublevelnb" : 0 } , - {"value" : "OBT:004248", - "label" : "transamination activity" + {"extid" : "OBT:004234", + "value" : "OBT:004234", + "label" : "deacidification", + "descendantnb" : 0, + "sublevelnb" : 0 } - ] + ] , + "descendantnb" : 2, + "sublevelnb" : 1 } , - {"value" : "OBT:004208", - "label" : "autolysis" - } - , - {"value" : "OBT:004216", - "label" : "heterofermentative", + {"extid" : "OBT:004202", + "value" : "OBT:004202", + "label" : "amination activity", "children" :[ - {"value" : "OBT:004236", - "label" : "facultative heterofermentative" + {"extid" : "OBT:004235", + "value" : "OBT:004235", + "label" : "deamination activity", + "descendantnb" : 0, + "sublevelnb" : 0 } , - {"value" : "OBT:004239", - "label" : "obligate heterofermentative" + {"extid" : "OBT:004248", + "value" : "OBT:004248", + "label" : "transamination activity", + "descendantnb" : 0, + "sublevelnb" : 0 } - ] + ] , + "descendantnb" : 2, + "sublevelnb" : 1 } , - {"value" : "OBT:004217", - "label" : "homofermentative" + {"extid" : "OBT:004208", + "value" : "OBT:004208", + "label" : "autolysis", + "descendantnb" : 0, + "sublevelnb" : 0 } , - {"value" : "OBT:004218", - "label" : "lipolytic activity" + {"extid" : "OBT:004218", + "value" : "OBT:004218", + "label" : "lipolytic activity", + "descendantnb" : 0, + "sublevelnb" : 0 } , - {"value" : "OBT:004223", - "label" : "proteolytic activity" + {"extid" : "OBT:004223", + "value" : "OBT:004223", + "label" : "proteolytic activity", + "descendantnb" : 0, + "sublevelnb" : 0 } - ] + ] , + "descendantnb" : 14, + "sublevelnb" : 3 } , - {"value" : "OBT:004195", + {"extid" : "OBT:004195", + "value" : "OBT:004195", "label" : "mixture transformation", "children" :[ - {"value" : "OBT:004210", - "label" : "cheese making" + {"extid" : "OBT:004210", + "value" : "OBT:004210", + "label" : "cheese making", + "descendantnb" : 0, + "sublevelnb" : 0 } , - {"value" : "OBT:004211", - "label" : "coagulation process" + {"extid" : "OBT:004211", + "value" : "OBT:004211", + "label" : "coagulation process", + "descendantnb" : 0, + "sublevelnb" : 0 } , - {"value" : "OBT:004219", - "label" : "maturation process" + {"extid" : "OBT:004219", + "value" : "OBT:004219", + "label" : "maturation process", + "descendantnb" : 0, + "sublevelnb" : 0 } , - {"value" : "OBT:004220", - "label" : "milk acidification" + {"extid" : "OBT:004220", + "value" : "OBT:004220", + "label" : "milk acidification", + "descendantnb" : 0, + "sublevelnb" : 0 } , - {"value" : "OBT:004224", + {"extid" : "OBT:004224", + "value" : "OBT:004224", "label" : "ripening process", "children" :[ - {"value" : "OBT:004232", - "label" : "cheese aging" + {"extid" : "OBT:004232", + "value" : "OBT:004232", + "label" : "cheese aging", + "descendantnb" : 0, + "sublevelnb" : 0 } , - {"value" : "OBT:004233", - "label" : "cheese ripening" + {"extid" : "OBT:004233", + "value" : "OBT:004233", + "label" : "cheese ripening", + "descendantnb" : 0, + "sublevelnb" : 0 } - ] + ] , + "descendantnb" : 2, + "sublevelnb" : 1 } , - {"value" : "OBT:004226", - "label" : "spoilage" + {"extid" : "OBT:004226", + "value" : "OBT:004226", + "label" : "spoilage", + "descendantnb" : 0, + "sublevelnb" : 0 } - ] + ] , + "descendantnb" : 8, + "sublevelnb" : 2 } , - {"value" : "OBT:004196", + {"extid" : "OBT:004196", + "value" : "OBT:004196", "label" : "mixture transformation origin", "children" :[ - {"value" : "OBT:004221", - "label" : "non-starter" + {"extid" : "OBT:004221", + "value" : "OBT:004221", + "label" : "non-starter", + "descendantnb" : 0, + "sublevelnb" : 0 } , - {"value" : "OBT:004227", - "label" : "starter" + {"extid" : "OBT:004227", + "value" : "OBT:004227", + "label" : "starter", + "descendantnb" : 0, + "sublevelnb" : 0 } - ] + ] , + "descendantnb" : 2, + "sublevelnb" : 1 } , - {"value" : "OBT:004197", - "label" : "pathogenic activity" + {"extid" : "OBT:004197", + "value" : "OBT:004197", + "label" : "pathogenic activity", + "descendantnb" : 0, + "sublevelnb" : 0 } , - {"value" : "OBT:004198", + {"extid" : "OBT:004198", + "value" : "OBT:004198", "label" : "sensory quality", "children" :[ - {"value" : "OBT:004207", - "label" : "aroma property" + {"extid" : "OBT:004207", + "value" : "OBT:004207", + "label" : "aroma property", + "descendantnb" : 0, + "sublevelnb" : 0 } , - {"value" : "OBT:004212", + {"extid" : "OBT:004212", + "value" : "OBT:004212", "label" : "colour property", "children" :[ - {"value" : "OBT:004242", - "label" : "pigmentation" + {"extid" : "OBT:004242", + "value" : "OBT:004242", + "label" : "pigmentation", + "descendantnb" : 0, + "sublevelnb" : 0 } - ] + ] , + "descendantnb" : 1, + "sublevelnb" : 1 } , - {"value" : "OBT:004213", + {"extid" : "OBT:004213", + "value" : "OBT:004213", "label" : "flavour property", "children" :[ - {"value" : "OBT:004249", + {"extid" : "OBT:004249", + "value" : "OBT:004249", "label" : "trigeminal sensation", "children" :[ - {"value" : "OBT:004252", - "label" : "astringent sensation" + {"extid" : "OBT:004252", + "value" : "OBT:004252", + "label" : "astringent sensation", + "descendantnb" : 0, + "sublevelnb" : 0 } , - {"value" : "OBT:004253", - "label" : "hot sensation" + {"extid" : "OBT:004253", + "value" : "OBT:004253", + "label" : "hot sensation", + "descendantnb" : 0, + "sublevelnb" : 0 } , - {"value" : "OBT:004254", - "label" : "metallic sensation" + {"extid" : "OBT:004254", + "value" : "OBT:004254", + "label" : "metallic sensation", + "descendantnb" : 0, + "sublevelnb" : 0 } , - {"value" : "OBT:004255", - "label" : "pungent sensation" + {"extid" : "OBT:004255", + "value" : "OBT:004255", + "label" : "pungent sensation", + "descendantnb" : 0, + "sublevelnb" : 0 } - ] + ] , + "descendantnb" : 4, + "sublevelnb" : 1 } - ] + ] , + "descendantnb" : 5, + "sublevelnb" : 2 } , - {"value" : "OBT:004225", + {"extid" : "OBT:004225", + "value" : "OBT:004225", "label" : "smell property", "children" :[ - {"value" : "OBT:004240", - "label" : "odour" + {"extid" : "OBT:004240", + "value" : "OBT:004240", + "label" : "odour", + "descendantnb" : 0, + "sublevelnb" : 0 } , - {"value" : "OBT:004241", - "label" : "off-odours" + {"extid" : "OBT:004241", + "value" : "OBT:004241", + "label" : "off-odours", + "descendantnb" : 0, + "sublevelnb" : 0 } - ] + ] , + "descendantnb" : 2, + "sublevelnb" : 1 } , - {"value" : "OBT:004228", + {"extid" : "OBT:004228", + "value" : "OBT:004228", "label" : "taste property", "children" :[ - {"value" : "OBT:004231", - "label" : "bitter property" + {"extid" : "OBT:004231", + "value" : "OBT:004231", + "label" : "bitter property", + "descendantnb" : 0, + "sublevelnb" : 0 } , - {"value" : "OBT:004244", - "label" : "salty property" + {"extid" : "OBT:004244", + "value" : "OBT:004244", + "label" : "salty property", + "descendantnb" : 0, + "sublevelnb" : 0 } , - {"value" : "OBT:004245", - "label" : "sour property" + {"extid" : "OBT:004245", + "value" : "OBT:004245", + "label" : "sour property", + "descendantnb" : 0, + "sublevelnb" : 0 } , - {"value" : "OBT:004247", - "label" : "sweet property" + {"extid" : "OBT:004247", + "value" : "OBT:004247", + "label" : "sweet property", + "descendantnb" : 0, + "sublevelnb" : 0 } , - {"value" : "OBT:004250", - "label" : "umami property" + {"extid" : "OBT:004250", + "value" : "OBT:004250", + "label" : "umami property", + "descendantnb" : 0, + "sublevelnb" : 0 } - ] + ] , + "descendantnb" : 5, + "sublevelnb" : 1 } , - {"value" : "OBT:004229", + {"extid" : "OBT:004229", + "value" : "OBT:004229", "label" : "texture property", "children" :[ - {"value" : "OBT:004237", - "label" : "granular property" + {"extid" : "OBT:004237", + "value" : "OBT:004237", + "label" : "granular property", + "descendantnb" : 0, + "sublevelnb" : 0 } , - {"value" : "OBT:004238", - "label" : "hydrophobicity property" + {"extid" : "OBT:004238", + "value" : "OBT:004238", + "label" : "hydrophobicity property", + "descendantnb" : 0, + "sublevelnb" : 0 } , - {"value" : "OBT:004243", - "label" : "ropiness property" + {"extid" : "OBT:004243", + "value" : "OBT:004243", + "label" : "ropiness property", + "descendantnb" : 0, + "sublevelnb" : 0 } , - {"value" : "OBT:004246", - "label" : "stretchability property" + {"extid" : "OBT:004246", + "value" : "OBT:004246", + "label" : "stretchability property", + "descendantnb" : 0, + "sublevelnb" : 0 } , - {"value" : "OBT:004251", - "label" : "viscosity property" + {"extid" : "OBT:004251", + "value" : "OBT:004251", + "label" : "viscosity property", + "descendantnb" : 0, + "sublevelnb" : 0 } - ] + ] , + "descendantnb" : 5, + "sublevelnb" : 1 } - ] + ] , + "descendantnb" : 24, + "sublevelnb" : 3 } -] -} -] +] , +"descendantnb" : 66, +"sublevelnb" : 4 +}] + diff --git a/templates/release.html b/templates/release.html index 18d9801..7921100 100644 --- a/templates/release.html +++ b/templates/release.html @@ -31,7 +31,96 @@ <div class="card" style="border-color: #21517A;"> <div class="card-header text-center" style="background-color: #21517A; border-color: #21517A; color: #fff;"> - Omnicrobe 1.0 (<i>current release</i>) + Omnicrobe 1.1 (<i>current release</i>) + </div> + <div class="card-body"> + <p align='justify'> + <h5 class="text-info">Information about the data</h5> + <ul> + <li>Ontologies used: <a href="http://agroportal.lirmm.fr/ontologies/ONTOBIOTOPE" target="_blank">OntoBiotope</a> version 2022-04-28 & <a href="https://forgemia.inra.fr/omnicrobe/extended-microorganisms-taxonomy" target="_blank">Taxonomy</a> version 2022-10-21.</li> + </ul> + <div style="margin-left: 15%;margin-right: 15%;"> + <table class="table table-sm table-striped"> + <caption class="text-center">Versions and number of relationships per source</caption> + <thead> + <tr> + <th scope="col"></th> + <th class="text-right" scope="col">PubMed</th> + <th class="text-right" scope="col">GenBank</th> + <th class="text-right" scope="col">DSMZ</th> + <th class="text-right" scope="col">CIRM-BIA</th> + <th class="text-right" scope="col">CIRM-CFBP</th> + <th class="text-right" scope="col">CIRM-Levures</th> + </tr> + </thead> + <tbody> + <tr> + <th scope="row">Version</th> + <td class="text-right">2022-10-07</td> + <td class="text-right">2022-10-26</td> + <td class="text-right">2022-10-26</td> + <td class="text-right">2022-09-30</td> + <td class="text-right">2022-10-07</td> + <td class="text-right">2021-10-14</td> + </tr> + <tr> + <th scope="row">Taxa - Habitat relations</th> + <td class="text-right">731,066</td> + <td class="text-right">266,417</td> + <td class="text-right">50,499</td> + <td class="text-right">669</td> + <td class="text-right">1,337</td> + <td class="text-right">941</td> + </tr> + <tr> + <th scope="row">Taxa - Phenotype relations</th> + <td class="text-right">51,216</td> + <td class="text-right">-</td> + <td class="text-right">-</td> + <td class="text-right">-</td> + <td class="text-right">-</td> + <td class="text-right">-</td> + </tr> + <tr> + <th scope="row">Taxa - Use relations</th> + <td class="text-right">17,225</td> + <td class="text-right">-</td> + <td class="text-right">-</td> + <td class="text-right">-</td> + <td class="text-right">-</td> + <td class="text-right">-</td> + </tr> + </tbody> + </table> + </div> + + <h5 class="text-info">New features and improvements in this release</h5> + <ul> + <li>improved extraction quality</li> + <li>fixed bugs</li> + <li>updated taxonomy</li> + </ul> + <!-- <h5 class="text-info">Fixed in this release</h5> + <ul> + <li>...</li> + </ul> --> + <!--h5 class="text-info">Source code</h5> + <ul> + <li>Text-mining workflow: GitHub repository (<a class="text-info" target="_blank" href="https://creativecommons.org/licenses/by/2.0/deed.en">CC-BY license</a>).</li> + <li>Web interface: GitHub repository (<a class="text-info" target="_blank" href="https://creativecommons.org/licenses/by/2.0/deed.en">CC-BY license</a>).</li> + </ul--> + </p> + </div> + <div class="card-footer text-center" style="background-color: #21517A; border-color: #21517A; color: #fff;"> + 7 November 2022 + </div> + </div> + <br/> + <p><h4 class="text-info">Previous releases</h4></p> + + <div class="card" style="border-color: #21517A;"> + <div class="card-header text-center" style="background-color: #21517A; border-color: #21517A; color: #fff;"> + Omnicrobe 1.0 </div> <div class="card-body"> <p align='justify'> @@ -117,8 +206,6 @@ </div> </div> <br/> - <p><h4 class="text-info">Previous releases</h4></p> - <div class="card" style="border-color: #21517A;"> <div class="card-header text-center" style="background-color: #21517A; border-color: #21517A; color: #fff;"> Omnicrobe 0.2 -- GitLab From bcf204eb529c46d835bb8f870352685aa37b77a3 Mon Sep 17 00:00:00 2001 From: Sandra Derozier <sandra.derozier@inrae.fr> Date: Mon, 16 Jan 2023 16:44:30 +0100 Subject: [PATCH 2/2] Change marge API page & Footer --- templates/api.html | 15 ++++++++------- templates/footer | 2 +- 2 files changed, 9 insertions(+), 8 deletions(-) diff --git a/templates/api.html b/templates/api.html index 1115ee4..dee75df 100644 --- a/templates/api.html +++ b/templates/api.html @@ -58,15 +58,16 @@ </div> </div> </div> - </div> + <!-- </div> --> - <br/> + <br/> - <div class="alert alert-info" role="alert"> - <h7 style="color: #17a2b8;">Citing Omnicrobe</h7> - <hr/> - <p style="font-size:0.9rem;" align="justify">The Omnicrobe database and the associated data are free of use, available under the <a class="text-info" target="_blank" href="https://creativecommons.org/licenses/by/2.0/deed.en">CC-BY license</a>. If you share or adapt it, you must give appropriate credit: provide a link to the license, indicate if changes were made and cite the paper:<br/><br/> - Falentin, H., Chaix, E., Dérozier, S., Weber, M., Buchin, S., Dridi, B., Deutsch, S.-M., Valence-Bertel, F., Casaregola, S., Renault, P., Champomier-Vergès, M.-C., Thierry, A., Zagorec, M., Irlinger, F., Delbes, C., Aubin, S., Bessières, P., Loux, V., Bossy, R., Dibie, J., Sicard, D., Nédellec, C. (2017, October). Florilege: a database gathering microbial phenotypes of food interest. <i>In 4th International Conference on Microbial Diversity 2017</i>, Bari, ITA (2017-10-24 - 2017-10-26).<p> + <div class="alert alert-info" role="alert"> + <h7 style="color: #17a2b8;">Citing Omnicrobe</h7> + <hr/> + <p style="font-size:0.9rem;" align="justify">The Omnicrobe database and the associated data are free of use, available under the <a class="text-info" target="_blank" href="https://creativecommons.org/licenses/by/2.0/deed.en">CC-BY license</a>. If you share or adapt it, you must give appropriate credit: provide a link to the license, indicate if changes were made and cite the paper:<br/><br/> + Falentin, H., Chaix, E., Dérozier, S., Weber, M., Buchin, S., Dridi, B., Deutsch, S.-M., Valence-Bertel, F., Casaregola, S., Renault, P., Champomier-Vergès, M.-C., Thierry, A., Zagorec, M., Irlinger, F., Delbes, C., Aubin, S., Bessières, P., Loux, V., Bossy, R., Dibie, J., Sicard, D., Nédellec, C. (2017, October). 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