Recode fasta_extract / Improve process assembly_filter
Improve process assembly_filter
Do not perform twice fasta_extract.pl, if you have huge number of contigs you should do it one time only.
Develop a script which write 2 files :
- contig selected
- contig discarded
For example select_contig.py --input contigs.fa --list_select selected.txt --select output_select.fa --discard output_discard.fa
If the contig is not in select list write it in discard file.
Edited by Celine Noirot