From 480d6bd2cb668e786a51410e3088add2a94ed56e Mon Sep 17 00:00:00 2001
From: philippe tcheriatinsky <philippe.tcherniatinsky@inrae.fr>
Date: Mon, 27 Jan 2025 18:55:15 +0100
Subject: [PATCH] =?UTF-8?q?Refonte=20des=20droits=20pour=20les=20op=C3=A9r?=
=?UTF-8?q?ations=20de=20publication=20/=20d=C3=A9p=C3=B4t/=20suppression?=
MIME-Version: 1.0
Content-Type: text/plain; charset=UTF-8
Content-Transfer-Encoding: 8bit
- utilisation de serviceContainer.authorizationService().getPrivilegeAssessorForApplication
- créations de rôles dédies
Reste à faire du refactoring pour remonter certaines fonctionnailtes dans les objets métiers pour réutilisation
Code mort à supprimer
---
.../oresing/domain/BinaryFileDataset.java | 35 +++-
.../application/configuration/Submission.java | 2 +-
.../AuthorizationsForApplicationUser.java | 55 ++++--
...PrivilegeAssessorDomainForApplication.java | 84 +++++++--
.../NotApplicationDataReaderException.java | 25 +++
.../NotApplicationDataWriterException.java | 25 +++
...licationDataWriterForDepositException.java | 17 ++
...licationDataWriterForPublishException.java | 25 +++
.../exception/NotOpenAdomAdminException.java | 6 +-
.../role/ApplicationAdminUser.java | 31 +++-
.../role/ApplicationDataDelete.java | 22 +++
.../role/ApplicationDataReader.java | 15 ++
.../role/ApplicationDataWriter.java | 161 +++++++++++++++++
.../role/ApplicationDeleteUser.java | 75 ++++++++
.../role/ApplicationDepositUser.java | 8 +
.../role/ApplicationDepositWriterUser.java | 50 ++++++
.../role/ApplicationManager.java | 3 +-
.../role/ApplicationManagerUser.java | 33 +++-
.../role/ApplicationPublishWriterUser.java | 51 ++++++
.../role/ApplicationReader.java | 34 ----
.../role/ApplicationUser.java | 3 +-
.../role/PrivilegeApplicationDomain.java | 1 +
.../data/read/query/ComponentOrderBy.java | 4 +-
.../read/query/ComponentOrderByForExport.java | 5 +-
.../read/query/ComponentPatternOrderBy.java | 4 +-
.../query/ComponentPatternValueOrderBy.java | 10 +-
.../read/query/DynamicComponentOrderBy.java | 4 +-
.../AuthorizationRequestException.java | 2 +-
.../inra/oresing/domain/file/FileOrUUID.java | 14 +-
.../repository/data/DataRepository.java | 4 +-
.../data/DataRepositoryForBuffer.java | 6 +
.../services/file/BinaryFileService.java | 7 +-
.../oresing/persistence/DataRepository.java | 4 +-
.../fr/inra/oresing/persistence/DataRow.java | 12 +-
.../data/read/DataRepositoryWithBuffer.java | 16 +-
.../fr/inra/oresing/rest/OreSiResources.java | 71 ++++----
.../rest/binaryFile/BinaryFileService.java | 13 +-
.../inra/oresing/rest/data/DataService.java | 21 ++-
.../oresing/rest/data/VersioningService.java | 72 +++++---
.../rest/data/extraction/DataCsvBuilder.java | 12 +-
.../data/extraction/DataCsvHeaderWriter.java | 8 +-
.../data/extraction/DataCsvRowBuilder.java | 3 +-
.../publication/AuthorizationForUser.java | 6 +-
.../AuthorizationForUserBuilder.java | 166 ------------------
.../AuthorizationPublicationService.java | 80 ++++-----
...uthorizationPublicationServiceBuilder.java | 93 +++++-----
...heckRights.java => CheckAndStoreFile.java} | 24 +--
.../data/publication/FileNameResolver.java | 13 +-
.../rest/data/publication/ParamsResolver.java | 42 -----
.../oresing/rest/data/publication/State.java | 36 +---
.../rest/data/publication/StoreFile.java | 84 +++++----
.../data/publication/StoredFileBuilder.java | 28 +++
.../data/publication/UnPublishedVersions.java | 10 +-
.../rest/exceptions/OreSiIOException.java | 14 ++
.../authorization/GetGrantableResult.java | 3 +-
.../rest/model/data/DataRowResult.java | 3 +-
.../java/fr/inra/oresing/rest/Fixtures.java | 4 +-
.../inra/oresing/rest/OreSiResourcesTest.java | 36 ++--
.../fixtures/applications/errors/errors.json | 2 +-
.../ore/monsore/changeMonsore.txt | 34 ++--
.../ore/monsore/createMonsore.txt | 42 ++---
.../ore/monsore/validateMonsore.txt | 20 +--
62 files changed, 1143 insertions(+), 650 deletions(-)
create mode 100644 src/main/java/fr/inra/oresing/domain/authorization/privilegeassessor/exception/NotApplicationDataReaderException.java
create mode 100644 src/main/java/fr/inra/oresing/domain/authorization/privilegeassessor/exception/NotApplicationDataWriterException.java
create mode 100644 src/main/java/fr/inra/oresing/domain/authorization/privilegeassessor/exception/NotApplicationDataWriterForDepositException.java
create mode 100644 src/main/java/fr/inra/oresing/domain/authorization/privilegeassessor/exception/NotApplicationDataWriterForPublishException.java
create mode 100644 src/main/java/fr/inra/oresing/domain/authorization/privilegeassessor/role/ApplicationDataDelete.java
create mode 100644 src/main/java/fr/inra/oresing/domain/authorization/privilegeassessor/role/ApplicationDataReader.java
create mode 100644 src/main/java/fr/inra/oresing/domain/authorization/privilegeassessor/role/ApplicationDataWriter.java
create mode 100644 src/main/java/fr/inra/oresing/domain/authorization/privilegeassessor/role/ApplicationDeleteUser.java
create mode 100644 src/main/java/fr/inra/oresing/domain/authorization/privilegeassessor/role/ApplicationDepositUser.java
create mode 100644 src/main/java/fr/inra/oresing/domain/authorization/privilegeassessor/role/ApplicationDepositWriterUser.java
create mode 100644 src/main/java/fr/inra/oresing/domain/authorization/privilegeassessor/role/ApplicationPublishWriterUser.java
delete mode 100644 src/main/java/fr/inra/oresing/domain/authorization/privilegeassessor/role/ApplicationReader.java
delete mode 100644 src/main/java/fr/inra/oresing/rest/data/publication/AuthorizationForUserBuilder.java
rename src/main/java/fr/inra/oresing/rest/data/publication/{CheckRights.java => CheckAndStoreFile.java} (58%)
delete mode 100644 src/main/java/fr/inra/oresing/rest/data/publication/ParamsResolver.java
create mode 100644 src/main/java/fr/inra/oresing/rest/data/publication/StoredFileBuilder.java
create mode 100644 src/main/java/fr/inra/oresing/rest/exceptions/OreSiIOException.java
diff --git a/src/main/java/fr/inra/oresing/domain/BinaryFileDataset.java b/src/main/java/fr/inra/oresing/domain/BinaryFileDataset.java
index b42f9bd..e7fdd14 100644
--- a/src/main/java/fr/inra/oresing/domain/BinaryFileDataset.java
+++ b/src/main/java/fr/inra/oresing/domain/BinaryFileDataset.java
@@ -3,20 +3,23 @@ package fr.inra.oresing.domain;
import com.google.common.base.Strings;
import fr.inra.oresing.domain.application.configuration.Ltree;
import fr.inra.oresing.domain.application.configuration.date.LocalDateTimeRange;
+import fr.inra.oresing.domain.repository.data.DataRepositoryForBuffer;
import lombok.Getter;
import lombok.Setter;
import java.util.HashMap;
import java.util.List;
import java.util.Map;
+import java.util.Optional;
import java.util.stream.Collectors;
@Getter
@Setter
public class BinaryFileDataset {
- public static BinaryFileDataset EMPTY_INSTANCE(){
+ public static BinaryFileDataset EMPTY_INSTANCE() {
return new BinaryFileDataset();
}
+
private String datatype;
private Map<String, List<Ltree>> requiredAuthorizations = new HashMap<>();
private String from;
@@ -25,12 +28,36 @@ public class BinaryFileDataset {
@Override
public String toString() {
- final String authorizationsString =requiredAuthorizations.entrySet().stream()
+ final String authorizationsString = requiredAuthorizations.entrySet().stream()
.map(ra -> String.format("%s : %s", ra.getKey(), ra.getValue().getFirst().getSql()))
.collect(Collectors.joining(",", "[", "]"));
return String.format("%s -> [%s, %s]",
- authorizationsString, Strings.isNullOrEmpty(from) ?"": LocalDateTimeRange.DATE_FORMATTER_DDMMYYYY.format(LocalDateTimeRange.DATE_TIME_FORMATTER.parse(from)),
- Strings.isNullOrEmpty(to)?"": LocalDateTimeRange.DATE_FORMATTER_DDMMYYYY.format(LocalDateTimeRange.DATE_TIME_FORMATTER.parse(to))
+ authorizationsString, Strings.isNullOrEmpty(from) ? "" : LocalDateTimeRange.DATE_FORMATTER_DDMMYYYY.format(LocalDateTimeRange.DATE_TIME_FORMATTER.parse(from)),
+ Strings.isNullOrEmpty(to) ? "" : LocalDateTimeRange.DATE_FORMATTER_DDMMYYYY.format(LocalDateTimeRange.DATE_TIME_FORMATTER.parse(to))
);
}
+
+
+ public BinaryFileDataset testrequiredAuthorizationsAndReturnHierarchicalKeys(DataRepositoryForBuffer dataRepositoryForBuffer) {
+ BinaryFileDataset binaryFileDataset = this.copy();
+ Map<String, List<Ltree>> requiredAuthorizationsTested = Optional.ofNullable(binaryFileDataset)
+ .map(BinaryFileDataset::getRequiredAuthorizations).
+ orElseGet(HashMap::new);
+ for (Map.Entry<String, List<Ltree>> requiredAuthorizationByReference : requiredAuthorizationsTested.entrySet()) {
+ List<Ltree> hierarchicalKeyForEntry = dataRepositoryForBuffer.getHierarchicalKeyForEntry(requiredAuthorizationByReference);
+ requiredAuthorizationsTested.put(requiredAuthorizationByReference.getKey(), hierarchicalKeyForEntry);
+ }
+ return binaryFileDataset;
+
+ }
+
+ public BinaryFileDataset copy() {
+ BinaryFileDataset binaryFileDataset = new BinaryFileDataset();
+ binaryFileDataset.setRequiredAuthorizations(requiredAuthorizations);
+ binaryFileDataset.setTo(to);
+ binaryFileDataset.setFrom(from);
+ binaryFileDataset.setComment(comment);
+ binaryFileDataset.setDatatype(datatype);
+ return binaryFileDataset;
+ }
}
\ No newline at end of file
diff --git a/src/main/java/fr/inra/oresing/domain/application/configuration/Submission.java b/src/main/java/fr/inra/oresing/domain/application/configuration/Submission.java
index 0757ecb..5af7bd3 100644
--- a/src/main/java/fr/inra/oresing/domain/application/configuration/Submission.java
+++ b/src/main/java/fr/inra/oresing/domain/application/configuration/Submission.java
@@ -85,7 +85,7 @@ public record Submission(
} catch (Exception e) {
throw new SiOreAuthorizationRequestException(
- AuthorizationRequestException.INVAALID_FILE_NAME,
+ AuthorizationRequestException.INVALID_FILE_NAME,
Map.of("fileNameFormat", fileNameParsing().createExampleSubmissionFileName())
);
diff --git a/src/main/java/fr/inra/oresing/domain/authorization/privilegeassessor/AuthorizationsForApplicationUser.java b/src/main/java/fr/inra/oresing/domain/authorization/privilegeassessor/AuthorizationsForApplicationUser.java
index adb573e..025c72b 100644
--- a/src/main/java/fr/inra/oresing/domain/authorization/privilegeassessor/AuthorizationsForApplicationUser.java
+++ b/src/main/java/fr/inra/oresing/domain/authorization/privilegeassessor/AuthorizationsForApplicationUser.java
@@ -4,10 +4,8 @@ import fr.inra.oresing.domain.application.Application;
import fr.inra.oresing.domain.repository.authorization.OperationType;
import fr.inra.oresing.rest.model.authorization.AuthorizationParsed;
-import java.util.List;
-import java.util.Map;
-import java.util.Optional;
-import java.util.Set;
+import java.util.*;
+import java.util.stream.Collectors;
public record AuthorizationsForApplicationUser(
List<String> roles,
@@ -18,20 +16,45 @@ public record AuthorizationsForApplicationUser(
Map<String, AuthorizationParsed> publicAuthorizations
) {
public boolean canRead(String dataName) {
+ return canDoAction(dataName, Set.of(OperationType.extraction));
+ }
+
+ /* find if exists authorization foroperationtype of action */
+ private boolean canDoAction(String dataName, Set<OperationType> actions) {
if(isApplicationManager || isUserManager){
return true;
}
- return
- Optional.of(userAuthorizations())
- .map(authorizations -> authorizations.get(dataName))
- .stream().flatMap(List::stream)
- .map(AuthorizationParsed::operationTypes)
- .flatMap(Set::stream)
- .anyMatch(OperationType.extraction::equals) ||
- Optional.of(publicAuthorizations())
- .map(authorizations -> authorizations.get(dataName))
- .map(AuthorizationParsed::operationTypes)
- .stream().flatMap(Set::stream)
- .anyMatch(OperationType.extraction::equals);
+ return Optional.of(userAuthorizations())
+ .map(authorizations -> authorizations.get(dataName))
+ .stream().flatMap(List::stream)
+ .map(AuthorizationParsed::operationTypes)
+ .flatMap(Set::stream)
+ .anyMatch(actions::contains) ||
+ Optional.of(publicAuthorizations())
+ .map(authorizations -> authorizations.get(dataName))
+ .map(AuthorizationParsed::operationTypes)
+ .stream().flatMap(Set::stream)
+ .anyMatch(actions::contains);
+ }
+
+ public ArrayList<AuthorizationParsed> getAuthorizations(String dataName, Set<OperationType> actions){
+ ArrayList<AuthorizationParsed> parsedAuthorisationForActions = Optional.of(userAuthorizations())
+ .map(authorizations -> authorizations.get(dataName))
+ .stream().flatMap(List::stream)
+ .filter(authorizationParsed -> authorizationParsed.operationTypes().stream().anyMatch(actions::contains))
+ .collect(Collectors.toCollection(ArrayList::new));
+ Optional.of(publicAuthorizations())
+ .map(authorizations -> authorizations.get(dataName))
+ .filter(authorizationParsed -> authorizationParsed.operationTypes().stream().anyMatch(actions::contains))
+ .ifPresent(parsedAuthorisationForActions::add);
+ return parsedAuthorisationForActions;
+ }
+
+ public boolean canWrite(String dataName, boolean toPublish) {
+ return canDoAction(dataName, toPublish?Set.of(OperationType.publication):Set.of(OperationType.depot));
+ }
+
+ public boolean canDelete(String dataName, boolean isRepository) {
+ return canDoAction(dataName, isRepository?Set.of(OperationType.publication, OperationType.delete):Set.of(OperationType.publication));
}
}
diff --git a/src/main/java/fr/inra/oresing/domain/authorization/privilegeassessor/PrivilegeAssessorDomainForApplication.java b/src/main/java/fr/inra/oresing/domain/authorization/privilegeassessor/PrivilegeAssessorDomainForApplication.java
index 0457897..a0e5890 100644
--- a/src/main/java/fr/inra/oresing/domain/authorization/privilegeassessor/PrivilegeAssessorDomainForApplication.java
+++ b/src/main/java/fr/inra/oresing/domain/authorization/privilegeassessor/PrivilegeAssessorDomainForApplication.java
@@ -1,13 +1,10 @@
package fr.inra.oresing.domain.authorization.privilegeassessor;
import fr.inra.oresing.domain.application.Application;
-import fr.inra.oresing.domain.authorization.privilegeassessor.exception.NotApplicationManagerRightsException;
-import fr.inra.oresing.domain.authorization.privilegeassessor.exception.NotApplicationUserManagerRightsException;
-import fr.inra.oresing.domain.authorization.privilegeassessor.exception.NotApplicationUserReaderRightsException;
-import fr.inra.oresing.domain.authorization.privilegeassessor.role.ApplicationAdminUser;
-import fr.inra.oresing.domain.authorization.privilegeassessor.role.ApplicationManager;
-import fr.inra.oresing.domain.authorization.privilegeassessor.role.ApplicationManagerUser;
-import fr.inra.oresing.domain.authorization.privilegeassessor.role.ApplicationReader;
+import fr.inra.oresing.domain.application.configuration.Submission;
+import fr.inra.oresing.domain.application.configuration.SubmissionType;
+import fr.inra.oresing.domain.authorization.privilegeassessor.exception.*;
+import fr.inra.oresing.domain.authorization.privilegeassessor.role.*;
import fr.inra.oresing.domain.repository.authorization.OperationType;
import fr.inra.oresing.rest.model.authorization.AuthorizationParsed;
import fr.inra.oresing.rest.model.authorization.AuthorizationsForUserResult;
@@ -21,6 +18,9 @@ public record PrivilegeAssessorDomainForApplication<PrivilegeApplicationDomain>(
PrivilegeApplicationDomain domain,
Application application,
GetGrantableResult grantable) implements PrivilegeAssessorDomain {
+ /*
+ Test if is applicationAdminUserForUpdate
+ */
public ApplicationManager forUpdateApplication() {
if (!authorizations.isApplicationManager()) {
throw new NotApplicationManagerRightsException(application.getName());
@@ -28,20 +28,30 @@ public record PrivilegeAssessorDomainForApplication<PrivilegeApplicationDomain>(
return new ApplicationAdminUser(application());
}
+ /*
+ Test if is applicationManagerUserForUpdateRights
+ */
public ApplicationManager forManageAuthorizations() {
if (!authorizations.isUserManager()) {
throw new NotApplicationUserManagerRightsException(application.getName());
}
- return new ApplicationManagerUser();
+ return new ApplicationManagerUser(application());
}
+
+ /*
+ Test if is applicationManagerUserForCreateRights
+ */
public ApplicationManager forAddAuthorization() {
if (!authorizations.isUserManager()) {
throw new NotApplicationUserReaderRightsException(application.getName());
}
- return new ApplicationManagerUser();
+ return new ApplicationManagerUser(application());
}
+ /*
+ Test if is applicationManagerUserForManageAdministrator
+ */
public ApplicationAdminUser forManageAdministrator() {
if (!authorizations.isApplicationManager()) {
throw new NotApplicationManagerRightsException(application.getName());
@@ -49,11 +59,15 @@ public record PrivilegeAssessorDomainForApplication<PrivilegeApplicationDomain>(
return new ApplicationAdminUser(application());
}
- public ApplicationReader forDataRead(String dataName) {
+
+ /*
+ Test if is applicationUserForReadingData
+ */
+ public ApplicationDataReader forDataRead(String dataName) {
Optional.of(authorizations())
.filter(authorizationsForApplicationUser -> authorizationsForApplicationUser.canRead(dataName))
- .orElseThrow(NotApplicationManagerRightsException::new);
- return new ApplicationReader(application());
+ .orElseThrow(()->new NotApplicationDataReaderException(application().getName(), dataName));
+ return new ApplicationDataReader(application());
}
public Map<AuthorizationsForUserResult.Roles, Boolean> getAuthorizationsForUser(String dataName) {
@@ -91,4 +105,50 @@ public record PrivilegeAssessorDomainForApplication<PrivilegeApplicationDomain>(
}
return new ApplicationAdminUser(application());
}
+
+ public ApplicationDataWriter forDataWrite(String dataName, boolean toPublish) {
+ AuthorizationsForApplicationUser authorizationsForApplicationUser = Optional.of(authorizations())
+ .filter(authorizations -> authorizations.canWrite(dataName, toPublish))
+ .orElseThrow(() -> new NotApplicationDataWriterException(application().getName(), dataName));
+ if(authorizationsForApplicationUser.isApplicationManager()){
+ return new ApplicationAdminUser(application(),dataName);
+ }
+ if(authorizationsForApplicationUser.isUserManager()){
+ return new ApplicationManagerUser(application(), dataName);
+ }
+ if(toPublish || !application().isData(dataName)){
+ return new ApplicationPublishWriterUser(
+ application(),
+ dataName,
+ authorizationsForApplicationUser.getAuthorizations(dataName, Set.of(OperationType.publication))
+ );
+ }
+ return new ApplicationDepositWriterUser(
+ application(),
+ dataName,
+ authorizationsForApplicationUser.getAuthorizations(dataName, Set.of(OperationType.depot))
+ );
+ }
+
+ public ApplicationDataDelete forDataDelete(String dataName) {
+ boolean isRepository = application().findSubmission(dataName)
+ .map(Submission::strategy)
+ .filter(SubmissionType.OA_VERSIONING::equals)
+ .isPresent();
+ AuthorizationsForApplicationUser authorizationsForApplicationUser = Optional.of(authorizations())
+ .filter(authorizations -> authorizations.canDelete(dataName, isRepository))
+ .orElseThrow(() -> new NotApplicationCanDeleteRightsException(application().getName(), dataName));
+ if(authorizationsForApplicationUser.isApplicationManager()){
+ return new ApplicationAdminUser(application(),dataName);
+ }
+ if(authorizationsForApplicationUser.isUserManager()){
+ return new ApplicationManagerUser(application(), dataName);
+ }
+ return new ApplicationDeleteUser(
+ application(),
+ dataName,
+ authorizationsForApplicationUser.getAuthorizations(dataName, Set.of(OperationType.delete))
+ );
+ }
+
}
diff --git a/src/main/java/fr/inra/oresing/domain/authorization/privilegeassessor/exception/NotApplicationDataReaderException.java b/src/main/java/fr/inra/oresing/domain/authorization/privilegeassessor/exception/NotApplicationDataReaderException.java
new file mode 100644
index 0000000..9823578
--- /dev/null
+++ b/src/main/java/fr/inra/oresing/domain/authorization/privilegeassessor/exception/NotApplicationDataReaderException.java
@@ -0,0 +1,25 @@
+package fr.inra.oresing.domain.authorization.privilegeassessor.exception;
+
+import fr.inra.oresing.domain.exceptions.OreSiTechnicalException;
+import lombok.Getter;
+
+@Getter
+public class NotApplicationDataReaderException extends OreSiTechnicalException {
+ public static final String NO_RIGHT_FOR_USER_DATA_READER = "NO_RIGHT_FOR_USER_DATA_READER";
+ public String applicationName;
+ public String dataName;
+
+ public NotApplicationDataReaderException(final String applicationName, String dataName) {
+ super(NO_RIGHT_FOR_USER_DATA_READER);
+ this.applicationName = applicationName;
+ this.dataName = dataName;
+ }
+
+ public NotApplicationDataReaderException() {
+ super(NO_RIGHT_FOR_USER_DATA_READER);
+ }
+
+ public NotApplicationDataReaderException(final Throwable cause) {
+ super(NO_RIGHT_FOR_USER_DATA_READER, cause);
+ }
+}
\ No newline at end of file
diff --git a/src/main/java/fr/inra/oresing/domain/authorization/privilegeassessor/exception/NotApplicationDataWriterException.java b/src/main/java/fr/inra/oresing/domain/authorization/privilegeassessor/exception/NotApplicationDataWriterException.java
new file mode 100644
index 0000000..1285de4
--- /dev/null
+++ b/src/main/java/fr/inra/oresing/domain/authorization/privilegeassessor/exception/NotApplicationDataWriterException.java
@@ -0,0 +1,25 @@
+package fr.inra.oresing.domain.authorization.privilegeassessor.exception;
+
+import fr.inra.oresing.domain.exceptions.OreSiTechnicalException;
+import lombok.Getter;
+
+@Getter
+public class NotApplicationDataWriterException extends OreSiTechnicalException {
+ public static final String NO_RIGHT_FOR_USER_DATA_WRITER = "NO_RIGHT_FOR_USER_DATA_WRITER";
+ public String applicationName;
+ public String dataName;
+
+ public NotApplicationDataWriterException(final String applicationName, String dataName) {
+ super(NO_RIGHT_FOR_USER_DATA_WRITER);
+ this.applicationName = applicationName;
+ this.dataName = dataName;
+ }
+
+ public NotApplicationDataWriterException() {
+ super(NO_RIGHT_FOR_USER_DATA_WRITER);
+ }
+
+ public NotApplicationDataWriterException(final Throwable cause) {
+ super(NO_RIGHT_FOR_USER_DATA_WRITER, cause);
+ }
+}
\ No newline at end of file
diff --git a/src/main/java/fr/inra/oresing/domain/authorization/privilegeassessor/exception/NotApplicationDataWriterForDepositException.java b/src/main/java/fr/inra/oresing/domain/authorization/privilegeassessor/exception/NotApplicationDataWriterForDepositException.java
new file mode 100644
index 0000000..d3e72f6
--- /dev/null
+++ b/src/main/java/fr/inra/oresing/domain/authorization/privilegeassessor/exception/NotApplicationDataWriterForDepositException.java
@@ -0,0 +1,17 @@
+package fr.inra.oresing.domain.authorization.privilegeassessor.exception;
+
+import fr.inra.oresing.domain.exceptions.OreSiTechnicalException;
+import lombok.Getter;
+
+@Getter
+public class NotApplicationDataWriterForDepositException extends OreSiTechnicalException {
+ public static final String NO_RIGHT_FOR_USER_DATA_WRITER_FOR_DEPOSIT = "NO_RIGHT_FOR_USER_DATA_WRITER_FOR_DEPOSIT";
+ public String applicationName;
+ public String dataName;
+
+ public NotApplicationDataWriterForDepositException(final String applicationName, String dataName) {
+ super(NO_RIGHT_FOR_USER_DATA_WRITER_FOR_DEPOSIT);
+ this.applicationName = applicationName;
+ this.dataName = dataName;
+ }
+}
\ No newline at end of file
diff --git a/src/main/java/fr/inra/oresing/domain/authorization/privilegeassessor/exception/NotApplicationDataWriterForPublishException.java b/src/main/java/fr/inra/oresing/domain/authorization/privilegeassessor/exception/NotApplicationDataWriterForPublishException.java
new file mode 100644
index 0000000..14f4281
--- /dev/null
+++ b/src/main/java/fr/inra/oresing/domain/authorization/privilegeassessor/exception/NotApplicationDataWriterForPublishException.java
@@ -0,0 +1,25 @@
+package fr.inra.oresing.domain.authorization.privilegeassessor.exception;
+
+import fr.inra.oresing.domain.exceptions.OreSiTechnicalException;
+import lombok.Getter;
+
+@Getter
+public class NotApplicationDataWriterForPublishException extends OreSiTechnicalException {
+ public static final String NO_RIGHT_FOR_USER_DATA_WRITER_FOR_PUBLISH = "NO_RIGHT_FOR_USER_DATA_WRITER_FOR_PUBLISH";
+ public String applicationName;
+ public String dataName;
+
+ public NotApplicationDataWriterForPublishException(final String applicationName, String dataName) {
+ super(NO_RIGHT_FOR_USER_DATA_WRITER_FOR_PUBLISH);
+ this.applicationName = applicationName;
+ this.dataName = dataName;
+ }
+
+ public NotApplicationDataWriterForPublishException() {
+ super(NO_RIGHT_FOR_USER_DATA_WRITER_FOR_PUBLISH);
+ }
+
+ public NotApplicationDataWriterForPublishException(final Throwable cause) {
+ super(NO_RIGHT_FOR_USER_DATA_WRITER_FOR_PUBLISH, cause);
+ }
+}
\ No newline at end of file
diff --git a/src/main/java/fr/inra/oresing/domain/authorization/privilegeassessor/exception/NotOpenAdomAdminException.java b/src/main/java/fr/inra/oresing/domain/authorization/privilegeassessor/exception/NotOpenAdomAdminException.java
index 9b6f628..088dbba 100644
--- a/src/main/java/fr/inra/oresing/domain/authorization/privilegeassessor/exception/NotOpenAdomAdminException.java
+++ b/src/main/java/fr/inra/oresing/domain/authorization/privilegeassessor/exception/NotOpenAdomAdminException.java
@@ -3,12 +3,12 @@ package fr.inra.oresing.domain.authorization.privilegeassessor.exception;
import fr.inra.oresing.domain.exceptions.OreSiTechnicalException;
public class NotOpenAdomAdminException extends OreSiTechnicalException {
- public static final String openAdomAdmin_REQUIRED_FOR_OPERATION = "openAdomAdmin_REQUIRED_FOR_OPERATION";
+ public static final String OPEN_ADOM_ADMIN_REQUIRED_FOR_OPERATION = "OPEN_ADOM_ADMIN_REQUIRED_FOR_OPERATION";
public NotOpenAdomAdminException() {
- super(openAdomAdmin_REQUIRED_FOR_OPERATION);
+ super(OPEN_ADOM_ADMIN_REQUIRED_FOR_OPERATION);
}
public NotOpenAdomAdminException(final Throwable cause) {
- super(openAdomAdmin_REQUIRED_FOR_OPERATION, cause);
+ super(OPEN_ADOM_ADMIN_REQUIRED_FOR_OPERATION, cause);
}
}
\ No newline at end of file
diff --git a/src/main/java/fr/inra/oresing/domain/authorization/privilegeassessor/role/ApplicationAdminUser.java b/src/main/java/fr/inra/oresing/domain/authorization/privilegeassessor/role/ApplicationAdminUser.java
index 1b60257..7f5acfd 100644
--- a/src/main/java/fr/inra/oresing/domain/authorization/privilegeassessor/role/ApplicationAdminUser.java
+++ b/src/main/java/fr/inra/oresing/domain/authorization/privilegeassessor/role/ApplicationAdminUser.java
@@ -5,13 +5,22 @@ import fr.inra.oresing.domain.OreSiUser;
import fr.inra.oresing.domain.application.Application;
import fr.inra.oresing.domain.authorization.privilegeassessor.exception.IllegalRoleToBeGranted;
import fr.inra.oresing.domain.authorization.privilegeassessor.exception.IllegalUserToBeGranted;
+import fr.inra.oresing.domain.exceptions.OreSiTechnicalException;
+import fr.inra.oresing.domain.file.FileOrUUID;
import fr.inra.oresing.domain.repository.authorization.role.OreSiRightOnApplicationRole;
import java.util.List;
import java.util.Objects;
import java.util.Optional;
-public record ApplicationAdminUser(Application application) implements ApplicationManager {
+public record ApplicationAdminUser(
+ Application application,
+ String dataName
+) implements ApplicationManager, ApplicationDataWriter, ApplicationDataDelete {
+ public ApplicationAdminUser(Application application) {
+ this(application, ApplicationManager.ALL_DATANAMES);
+ }
+
@Override
public boolean canUpdateApplication() {
return true;
@@ -31,4 +40,24 @@ public record ApplicationAdminUser(Application application) implements Applicati
}
return true;
}
+
+ @Override
+ public boolean canDelete(FileOrUUID fileOrUUID) {
+ return true;
+ }
+
+ @Override
+ public boolean hasRightForPublishOrUnPublish(FileOrUUID fileOrUUID) {
+ return true;
+ }
+
+ @Override
+ public boolean hasRightForDeposit(FileOrUUID fileOrUUID) {
+ return true;
+ }
+
+ @Override
+ public OreSiTechnicalException getException() {
+ return null;
+ }
}
diff --git a/src/main/java/fr/inra/oresing/domain/authorization/privilegeassessor/role/ApplicationDataDelete.java b/src/main/java/fr/inra/oresing/domain/authorization/privilegeassessor/role/ApplicationDataDelete.java
new file mode 100644
index 0000000..b752eb0
--- /dev/null
+++ b/src/main/java/fr/inra/oresing/domain/authorization/privilegeassessor/role/ApplicationDataDelete.java
@@ -0,0 +1,22 @@
+package fr.inra.oresing.domain.authorization.privilegeassessor.role;
+
+import com.google.common.base.Strings;
+import fr.inra.oresing.domain.BinaryFileDataset;
+import fr.inra.oresing.domain.application.Application;
+import fr.inra.oresing.domain.application.configuration.Ltree;
+import fr.inra.oresing.domain.application.configuration.date.LocalDateTimeRange;
+import fr.inra.oresing.domain.exceptions.OreSiTechnicalException;
+import fr.inra.oresing.domain.file.FileOrUUID;
+import fr.inra.oresing.rest.model.authorization.AuthorizationParsed;
+import org.apache.commons.collections.CollectionUtils;
+
+import java.time.LocalDate;
+import java.time.LocalDateTime;
+import java.time.format.DateTimeFormatter;
+import java.util.*;
+import java.util.function.Predicate;
+import java.util.stream.Collectors;
+
+public sealed interface ApplicationDataDelete extends ApplicationDataWriter
+ permits ApplicationAdminUser, ApplicationDeleteUser, ApplicationManagerUser {
+}
diff --git a/src/main/java/fr/inra/oresing/domain/authorization/privilegeassessor/role/ApplicationDataReader.java b/src/main/java/fr/inra/oresing/domain/authorization/privilegeassessor/role/ApplicationDataReader.java
new file mode 100644
index 0000000..be9563a
--- /dev/null
+++ b/src/main/java/fr/inra/oresing/domain/authorization/privilegeassessor/role/ApplicationDataReader.java
@@ -0,0 +1,15 @@
+package fr.inra.oresing.domain.authorization.privilegeassessor.role;
+
+import fr.inra.oresing.domain.OreSiRoleForUser;
+import fr.inra.oresing.domain.OreSiUser;
+import fr.inra.oresing.domain.application.Application;
+import fr.inra.oresing.domain.authorization.privilegeassessor.exception.IllegalRoleToBeGranted;
+import fr.inra.oresing.domain.authorization.privilegeassessor.exception.IllegalUserToBeGranted;
+import fr.inra.oresing.domain.repository.authorization.role.OreSiRightOnApplicationRole;
+
+import java.util.List;
+import java.util.Objects;
+import java.util.Optional;
+
+public record ApplicationDataReader(Application application) implements ApplicationUser {
+}
diff --git a/src/main/java/fr/inra/oresing/domain/authorization/privilegeassessor/role/ApplicationDataWriter.java b/src/main/java/fr/inra/oresing/domain/authorization/privilegeassessor/role/ApplicationDataWriter.java
new file mode 100644
index 0000000..6da07e2
--- /dev/null
+++ b/src/main/java/fr/inra/oresing/domain/authorization/privilegeassessor/role/ApplicationDataWriter.java
@@ -0,0 +1,161 @@
+package fr.inra.oresing.domain.authorization.privilegeassessor.role;
+
+import com.google.common.base.Strings;
+import fr.inra.oresing.domain.BinaryFileDataset;
+import fr.inra.oresing.domain.application.Application;
+import fr.inra.oresing.domain.application.configuration.Ltree;
+import fr.inra.oresing.domain.application.configuration.date.LocalDateTimeRange;
+import fr.inra.oresing.domain.exceptions.OreSiTechnicalException;
+import fr.inra.oresing.domain.file.FileOrUUID;
+import fr.inra.oresing.rest.model.authorization.AuthorizationParsed;
+import org.apache.commons.collections.CollectionUtils;
+
+import java.time.LocalDate;
+import java.time.LocalDateTime;
+import java.time.format.DateTimeFormatter;
+import java.util.*;
+import java.util.function.Predicate;
+import java.util.stream.Collectors;
+
+public sealed interface ApplicationDataWriter extends ApplicationUser
+ permits ApplicationAdminUser, ApplicationDataDelete, ApplicationDeleteUser, ApplicationDepositWriterUser, ApplicationManagerUser, ApplicationPublishWriterUser {
+ boolean canDelete(FileOrUUID fileOrUUID);
+
+ boolean hasRightForPublishOrUnPublish(FileOrUUID fileOrUUID);
+
+ boolean hasRightForDeposit(FileOrUUID fileOrUUID);
+
+
+ Application application();
+
+ default String applicationName() {
+ return application().getName();
+ }
+
+ ;
+
+ String dataName();
+
+ default boolean isData() {
+ return application().isData(dataName());
+ }
+
+ OreSiTechnicalException getException();
+
+ default boolean testRequiredAuthorizations(Map<String, Set<String>> authorizationsScope, Map<String, List<Ltree>> submissionScope) {
+ if (submissionScope.isEmpty()) {
+ return true;
+ }
+ for (Map.Entry<String, Set<String>> authorizationScopeByReference : authorizationsScope.entrySet()) {
+ Set<String> authorizationScopes = authorizationScopeByReference.getValue();
+ if (!CollectionUtils.isEmpty(authorizationScopes) && !testSumissionScopeForReference(
+ authorizationScopes,
+ submissionScope.get(authorizationScopeByReference.getKey())
+ )) {
+ return false;
+ }
+ }
+ return true;
+ }
+
+ default boolean testSumissionScopeForReference(Set<String> authorizationScopes, List<Ltree> submissionScopes) {
+ if (CollectionUtils.isEmpty(submissionScopes)) {
+ return false;
+ }
+ if (!submissionScopes.stream()
+ .allMatch(sc -> authorizationScopes.contains(sc.getSql()))) {
+ return false;
+ }
+ return true;
+ }default boolean isDateInRangeAuthorized(
+ BinaryFileDataset binaryfiledataset,
+ List<AuthorizationParsed> authorizationParseds
+ ) {
+ // Extraction des dates de soumission
+ LocalDateTime from = Optional.ofNullable(binaryfiledataset)
+ .map(BinaryFileDataset::getFrom)
+ .filter(Predicate.not(Strings::isNullOrEmpty))
+ .map(date -> LocalDateTime.parse(date, DateTimeFormatter.ofPattern("yyyy-MM-dd HH:mm:ss")))
+ .orElse(LocalDateTime.MIN);
+
+ LocalDateTime to = Optional.ofNullable(binaryfiledataset)
+ .map(BinaryFileDataset::getTo)
+ .filter(Predicate.not(Strings::isNullOrEmpty))
+ .map(date -> LocalDateTime.parse(date, DateTimeFormatter.ofPattern("yyyy-MM-dd HH:mm:ss")))
+ .orElse(LocalDateTime.MAX);
+
+ LocalDateTimeRange submissionIntervalScope = LocalDateTimeRange.between(from, to);
+
+ // Liste des intervalles d'intersection
+ List<LocalDateTimeRange> authorizationMatchingIntervals = new ArrayList<>();
+
+ for (AuthorizationParsed authorizationParsed : authorizationParseds) {
+ LocalDateTimeRange authorizationIntervalScope = LocalDateTimeRange.between(
+ Optional.ofNullable(authorizationParsed)
+ .map(AuthorizationParsed::fromDay)
+ .map(LocalDate::atStartOfDay)
+ .orElse(LocalDateTime.MIN),
+ Optional.ofNullable(authorizationParsed)
+ .map(AuthorizationParsed::toDay)
+ .map(LocalDate::atStartOfDay)
+ .orElse(LocalDateTime.MAX)
+ );
+
+ // Vérification du chevauchement
+ if (submissionIntervalScope.getRange().lowerEndpoint()
+ .compareTo(authorizationIntervalScope.getRange().upperEndpoint()) <= 0 &&
+ submissionIntervalScope.getRange().upperEndpoint()
+ .compareTo(authorizationIntervalScope.getRange().lowerEndpoint()) >= 0) {
+
+ // Calcul de l'intervalle d'intersection
+ LocalDateTimeRange intersectionInterval = LocalDateTimeRange.between(
+ submissionIntervalScope.getRange().lowerEndpoint().compareTo(authorizationIntervalScope.getRange().lowerEndpoint()) <= 0 ?
+ authorizationIntervalScope.getRange().lowerEndpoint() :
+ submissionIntervalScope.getRange().lowerEndpoint(),
+ submissionIntervalScope.getRange().upperEndpoint().compareTo(authorizationIntervalScope.getRange().upperEndpoint()) >= 0 ?
+ authorizationIntervalScope.getRange().upperEndpoint() :
+ submissionIntervalScope.getRange().upperEndpoint()
+ );
+
+ authorizationMatchingIntervals.add(intersectionInterval);
+ }
+ }
+
+ // Vérification de la couverture totale
+ return verifyCoverageCompleteness(submissionIntervalScope, authorizationMatchingIntervals);
+ }
+
+ private boolean verifyCoverageCompleteness(
+ LocalDateTimeRange submissionIntervalScope,
+ List<LocalDateTimeRange> authorizationMatchingIntervals
+ ) {
+ // Trier les intervalles par date de début
+ List<LocalDateTimeRange> sortedIntervals = authorizationMatchingIntervals.stream()
+ .sorted(Comparator.comparing(interval -> interval.getRange().lowerEndpoint()))
+ .collect(Collectors.toList());
+
+ LocalDateTime currentCoverageEnd = submissionIntervalScope.getRange().lowerEndpoint();
+
+ for (LocalDateTimeRange interval : sortedIntervals) {
+ // Vérifier si l'intervalle couvre le trou précédent
+ if (interval.getRange().lowerEndpoint().compareTo(currentCoverageEnd) > 0) {
+ return false; // Trou dans la couverture
+ }
+
+ // Mettre à jour la fin de couverture
+ currentCoverageEnd = interval.getRange().upperEndpoint().compareTo(currentCoverageEnd) > 0
+ ? interval.getRange().upperEndpoint()
+ : currentCoverageEnd;
+ }
+
+ // Vérifier si la couverture atteint la fin de l'intervalle de soumission
+ boolean isFullyCovered = currentCoverageEnd.compareTo(submissionIntervalScope.getRange().upperEndpoint()) >= 0;
+
+ if (!isFullyCovered) {
+ throw getException();
+ }
+
+ return true;
+ }
+
+}
diff --git a/src/main/java/fr/inra/oresing/domain/authorization/privilegeassessor/role/ApplicationDeleteUser.java b/src/main/java/fr/inra/oresing/domain/authorization/privilegeassessor/role/ApplicationDeleteUser.java
new file mode 100644
index 0000000..c7258f6
--- /dev/null
+++ b/src/main/java/fr/inra/oresing/domain/authorization/privilegeassessor/role/ApplicationDeleteUser.java
@@ -0,0 +1,75 @@
+package fr.inra.oresing.domain.authorization.privilegeassessor.role;
+
+import fr.inra.oresing.domain.application.Application;
+import fr.inra.oresing.domain.authorization.privilegeassessor.exception.NotApplicationCanDeleteRightsException;
+import fr.inra.oresing.domain.exceptions.OreSiTechnicalException;
+import fr.inra.oresing.domain.file.FileOrUUID;
+import fr.inra.oresing.domain.repository.authorization.OperationType;
+import fr.inra.oresing.rest.model.authorization.AuthorizationParsed;
+import org.apache.commons.collections.CollectionUtils;
+
+import java.util.ArrayList;
+import java.util.List;
+import java.util.Optional;
+
+public record ApplicationDeleteUser(
+ Application application,
+ String dataName,
+ ArrayList<AuthorizationParsed> authorizations,
+ boolean isRepository
+) implements ApplicationDataDelete, ApplicationDataWriter {
+ public ApplicationDeleteUser(Application application, String dataName, ArrayList<AuthorizationParsed> authorizations) {
+ this(application, dataName, authorizations, application.findSubmission(dataName).isPresent());
+ }
+
+ @Override
+ public boolean canDelete(FileOrUUID fileOrUUID) {
+ List<AuthorizationParsed> authorizationParseds = authorizations().stream()
+ .filter(authorizationParsed -> Optional.ofNullable(authorizationParsed)
+ .map(AuthorizationParsed::operationTypes)
+ .stream().anyMatch(operationTypes->operationTypes.contains(OperationType.delete))
+ )
+ .filter(authorizationParsed -> testRequiredAuthorizations(authorizationParsed.requiredAuthorizations(), fileOrUUID.binaryfiledataset().getRequiredAuthorizations()))
+ .toList();
+ if(authorizationParseds.isEmpty()){
+ throw getException();
+ }
+ if(!isDateInRangeAuthorized(fileOrUUID.binaryfiledataset(), authorizationParseds)){
+ throw getException();
+ }
+ return true;
+ }
+
+ @Override
+ public boolean hasRightForPublishOrUnPublish(FileOrUUID fileOrUUID) {
+ List<AuthorizationParsed> authorizationParseds = authorizations().stream()
+ .filter(authorizationParsed -> Optional.ofNullable(authorizationParsed)
+ .map(AuthorizationParsed::operationTypes)
+ .stream().anyMatch(operationTypes->operationTypes.contains(OperationType.delete))
+ )
+ .filter(authorizationParsed -> testRequiredAuthorizations(authorizationParsed.requiredAuthorizations(), fileOrUUID.binaryfiledataset().getRequiredAuthorizations()))
+ .toList();
+ if(!isRepository()){
+ if(CollectionUtils.isEmpty(authorizationParseds)){
+ throw getException();
+ }
+ return true;
+ }
+ if(authorizationParseds.isEmpty()){
+ throw getException();
+ }
+ if(!isDateInRangeAuthorized(fileOrUUID.binaryfiledataset(), authorizationParseds)){
+ throw getException();
+ }
+ return true;
+ }
+
+ @Override
+ public boolean hasRightForDeposit(FileOrUUID fileOrUUID) {
+ return false;
+ }
+
+ public OreSiTechnicalException getException() {
+ return new NotApplicationCanDeleteRightsException(applicationName(), dataName());
+ }
+}
diff --git a/src/main/java/fr/inra/oresing/domain/authorization/privilegeassessor/role/ApplicationDepositUser.java b/src/main/java/fr/inra/oresing/domain/authorization/privilegeassessor/role/ApplicationDepositUser.java
new file mode 100644
index 0000000..81c0b1a
--- /dev/null
+++ b/src/main/java/fr/inra/oresing/domain/authorization/privilegeassessor/role/ApplicationDepositUser.java
@@ -0,0 +1,8 @@
+package fr.inra.oresing.domain.authorization.privilegeassessor.role;
+
+public record ApplicationDepositUser() implements ApplicationManager {
+ @Override
+ public boolean canUpdateApplication() {
+ return false;
+ }
+}
diff --git a/src/main/java/fr/inra/oresing/domain/authorization/privilegeassessor/role/ApplicationDepositWriterUser.java b/src/main/java/fr/inra/oresing/domain/authorization/privilegeassessor/role/ApplicationDepositWriterUser.java
new file mode 100644
index 0000000..bb6e10a
--- /dev/null
+++ b/src/main/java/fr/inra/oresing/domain/authorization/privilegeassessor/role/ApplicationDepositWriterUser.java
@@ -0,0 +1,50 @@
+package fr.inra.oresing.domain.authorization.privilegeassessor.role;
+
+import fr.inra.oresing.domain.application.Application;
+import fr.inra.oresing.domain.authorization.privilegeassessor.exception.NotApplicationDataWriterForDepositException;
+import fr.inra.oresing.domain.file.FileOrUUID;
+import fr.inra.oresing.rest.model.authorization.AuthorizationParsed;
+import org.apache.commons.collections.CollectionUtils;
+
+import java.util.*;
+
+public record ApplicationDepositWriterUser(
+ Application application,
+ String dataName,
+ ArrayList<AuthorizationParsed> authorizations
+) implements ApplicationDataWriter {
+ @Override
+ public boolean canDelete(FileOrUUID fileOrUUID) {
+ return false;
+ }
+
+ @Override
+ public boolean hasRightForPublishOrUnPublish(FileOrUUID fileOrUUID) {
+ return false;
+ }
+
+ @Override
+ public boolean hasRightForDeposit(FileOrUUID fileOrUUID) {
+ if(!isData()){
+ if(CollectionUtils.isEmpty(authorizations)){
+ throw getException();
+ }
+ return true;
+ }
+ List<AuthorizationParsed> authorizationParseds = authorizations().stream()
+ .filter(authorizationParsed -> testRequiredAuthorizations(authorizationParsed.requiredAuthorizations(), fileOrUUID.binaryfiledataset().getRequiredAuthorizations()))
+ .toList();
+ if(authorizationParseds.isEmpty()){
+ throw getException();
+ }
+ if(!isDateInRangeAuthorized(fileOrUUID.binaryfiledataset(), authorizationParseds)){
+ throw getException();
+ }
+ return true;
+ }
+
+ @Override
+ public NotApplicationDataWriterForDepositException getException() {
+ return new NotApplicationDataWriterForDepositException(applicationName(), dataName());
+ }
+}
diff --git a/src/main/java/fr/inra/oresing/domain/authorization/privilegeassessor/role/ApplicationManager.java b/src/main/java/fr/inra/oresing/domain/authorization/privilegeassessor/role/ApplicationManager.java
index 7a26c30..fbf8800 100644
--- a/src/main/java/fr/inra/oresing/domain/authorization/privilegeassessor/role/ApplicationManager.java
+++ b/src/main/java/fr/inra/oresing/domain/authorization/privilegeassessor/role/ApplicationManager.java
@@ -1,6 +1,7 @@
package fr.inra.oresing.domain.authorization.privilegeassessor.role;
public sealed interface ApplicationManager
- permits ApplicationManagerUser, ApplicationAdminUser {
+ permits ApplicationAdminUser, ApplicationDepositUser, ApplicationManagerUser {
+ public static String ALL_DATANAMES = "ALL_DATANAMES";
boolean canUpdateApplication();
}
diff --git a/src/main/java/fr/inra/oresing/domain/authorization/privilegeassessor/role/ApplicationManagerUser.java b/src/main/java/fr/inra/oresing/domain/authorization/privilegeassessor/role/ApplicationManagerUser.java
index b009567..582cc1e 100644
--- a/src/main/java/fr/inra/oresing/domain/authorization/privilegeassessor/role/ApplicationManagerUser.java
+++ b/src/main/java/fr/inra/oresing/domain/authorization/privilegeassessor/role/ApplicationManagerUser.java
@@ -1,9 +1,40 @@
package fr.inra.oresing.domain.authorization.privilegeassessor.role;
-public record ApplicationManagerUser() implements ApplicationManager {
+import fr.inra.oresing.domain.application.Application;
+import fr.inra.oresing.domain.exceptions.OreSiTechnicalException;
+import fr.inra.oresing.domain.file.FileOrUUID;
+
+public record ApplicationManagerUser(
+ Application application,
+ String dataName
+) implements ApplicationManager, ApplicationDataWriter, ApplicationDataDelete {
+
+ public ApplicationManagerUser(Application application) {
+ this(application, ApplicationManager.ALL_DATANAMES);
+ }
@Override
public boolean canUpdateApplication() {
return false;
}
+
+ @Override
+ public boolean canDelete(FileOrUUID fileOrUUID) {
+ return true;
+ }
+
+ @Override
+ public boolean hasRightForPublishOrUnPublish(FileOrUUID fileOrUUID) {
+ return true;
+ }
+
+ @Override
+ public boolean hasRightForDeposit(FileOrUUID fileOrUUID) {
+ return true;
+ }
+
+ @Override
+ public OreSiTechnicalException getException() {
+ return null;
+ }
}
diff --git a/src/main/java/fr/inra/oresing/domain/authorization/privilegeassessor/role/ApplicationPublishWriterUser.java b/src/main/java/fr/inra/oresing/domain/authorization/privilegeassessor/role/ApplicationPublishWriterUser.java
new file mode 100644
index 0000000..8c64f95
--- /dev/null
+++ b/src/main/java/fr/inra/oresing/domain/authorization/privilegeassessor/role/ApplicationPublishWriterUser.java
@@ -0,0 +1,51 @@
+package fr.inra.oresing.domain.authorization.privilegeassessor.role;
+
+import fr.inra.oresing.domain.application.Application;
+import fr.inra.oresing.domain.authorization.privilegeassessor.exception.NotApplicationDataWriterForDepositException;
+import fr.inra.oresing.domain.exceptions.OreSiTechnicalException;
+import fr.inra.oresing.domain.file.FileOrUUID;
+import fr.inra.oresing.rest.model.authorization.AuthorizationParsed;
+import org.apache.commons.collections.CollectionUtils;
+
+import java.util.ArrayList;
+import java.util.List;
+
+public record ApplicationPublishWriterUser(
+ Application application,
+ String dataName,
+ ArrayList<AuthorizationParsed> authorizations
+) implements ApplicationDataWriter {
+ @Override
+ public boolean canDelete(FileOrUUID fileOrUUID) {
+ return true;
+ }
+
+ @Override
+ public boolean hasRightForPublishOrUnPublish(FileOrUUID fileOrUUID) {
+ if(!isData()){
+ if(CollectionUtils.isEmpty(authorizations)){
+ throw getException();
+ }
+ return true;
+ }
+ List<AuthorizationParsed> authorizationParseds = authorizations().stream()
+ .filter(authorizationParsed -> testRequiredAuthorizations(authorizationParsed.requiredAuthorizations(), fileOrUUID.binaryfiledataset().getRequiredAuthorizations()))
+ .toList();
+ if(authorizationParseds.isEmpty()){
+ throw getException();
+ }
+ if(!isDateInRangeAuthorized(fileOrUUID.binaryfiledataset(), authorizationParseds)){
+ throw getException();
+ }
+ return true;
+ }
+
+ @Override
+ public boolean hasRightForDeposit(FileOrUUID fileOrUUID) {
+ return hasRightForPublishOrUnPublish(fileOrUUID);
+ }
+
+ public OreSiTechnicalException getException() {
+ return new NotApplicationDataWriterForDepositException(applicationName(), dataName());
+ }
+}
diff --git a/src/main/java/fr/inra/oresing/domain/authorization/privilegeassessor/role/ApplicationReader.java b/src/main/java/fr/inra/oresing/domain/authorization/privilegeassessor/role/ApplicationReader.java
deleted file mode 100644
index 57f4946..0000000
--- a/src/main/java/fr/inra/oresing/domain/authorization/privilegeassessor/role/ApplicationReader.java
+++ /dev/null
@@ -1,34 +0,0 @@
-package fr.inra.oresing.domain.authorization.privilegeassessor.role;
-
-import fr.inra.oresing.domain.OreSiRoleForUser;
-import fr.inra.oresing.domain.OreSiUser;
-import fr.inra.oresing.domain.application.Application;
-import fr.inra.oresing.domain.authorization.privilegeassessor.exception.IllegalRoleToBeGranted;
-import fr.inra.oresing.domain.authorization.privilegeassessor.exception.IllegalUserToBeGranted;
-import fr.inra.oresing.domain.repository.authorization.role.OreSiRightOnApplicationRole;
-
-import java.util.List;
-import java.util.Objects;
-import java.util.Optional;
-
-public record ApplicationReader(Application application) implements ApplicationUser {
- @Override
- public boolean canUpdateApplication() {
- return true;
- }
-
- public boolean canManagerRightOfUserForRole(OreSiUser user, OreSiRoleForUser roleForUser) {
- if (Optional.ofNullable(user)
- .map(OreSiUser::getChartes)
- .map(chartes -> chartes.get(application().getId().toString()))
- .isEmpty()) {
- throw new IllegalUserToBeGranted(Objects.requireNonNull(user), application().getName());
- }
- OreSiRightOnApplicationRole userManager = OreSiRightOnApplicationRole.userAdminOn(application());
- OreSiRightOnApplicationRole applicationManager = OreSiRightOnApplicationRole.adminOn(application());
- if (!List.of(applicationManager.getAsSqlRole(), userManager.getAsSqlRole()).toString().contains(roleForUser.role())) {
- throw new IllegalRoleToBeGranted(roleForUser.role());
- }
- return true;
- }
-}
diff --git a/src/main/java/fr/inra/oresing/domain/authorization/privilegeassessor/role/ApplicationUser.java b/src/main/java/fr/inra/oresing/domain/authorization/privilegeassessor/role/ApplicationUser.java
index da01230..21d73a6 100644
--- a/src/main/java/fr/inra/oresing/domain/authorization/privilegeassessor/role/ApplicationUser.java
+++ b/src/main/java/fr/inra/oresing/domain/authorization/privilegeassessor/role/ApplicationUser.java
@@ -1,6 +1,5 @@
package fr.inra.oresing.domain.authorization.privilegeassessor.role;
public sealed interface ApplicationUser
- permits ApplicationReader {
- boolean canUpdateApplication();
+ permits ApplicationDataReader, ApplicationDataWriter {
}
diff --git a/src/main/java/fr/inra/oresing/domain/authorization/privilegeassessor/role/PrivilegeApplicationDomain.java b/src/main/java/fr/inra/oresing/domain/authorization/privilegeassessor/role/PrivilegeApplicationDomain.java
index 4270995..9bca692 100644
--- a/src/main/java/fr/inra/oresing/domain/authorization/privilegeassessor/role/PrivilegeApplicationDomain.java
+++ b/src/main/java/fr/inra/oresing/domain/authorization/privilegeassessor/role/PrivilegeApplicationDomain.java
@@ -5,6 +5,7 @@ public enum PrivilegeApplicationDomain {
APPLICATION_MANAGER,
DATA_MANAGEMENT,
DATA_READ,
+ DATA_WRITE,
ADDITIONAL_FILE_MANAGEMENT,
AUTHORIZATION_MANAGEMENT,
RIGHTS_REQUEST_MANAGEMENT,
diff --git a/src/main/java/fr/inra/oresing/domain/data/read/query/ComponentOrderBy.java b/src/main/java/fr/inra/oresing/domain/data/read/query/ComponentOrderBy.java
index 7b53785..e985a46 100644
--- a/src/main/java/fr/inra/oresing/domain/data/read/query/ComponentOrderBy.java
+++ b/src/main/java/fr/inra/oresing/domain/data/read/query/ComponentOrderBy.java
@@ -3,8 +3,8 @@ package fr.inra.oresing.domain.data.read.query;
import fr.inra.oresing.domain.application.configuration.StandardDataDescription;
import fr.inra.oresing.domain.checker.type.FieldType;
import fr.inra.oresing.domain.exceptions.data.data.BadDownloadDatasetQuery;
+import fr.inra.oresing.domain.repository.data.DataRepositoryForBuffer;
import fr.inra.oresing.persistence.DataRepository;
-import fr.inra.oresing.persistence.data.read.DataRepositoryWithBuffer;
import java.util.Map;
import java.util.stream.Stream;
@@ -26,7 +26,7 @@ public record ComponentOrderBy(String componentKey, DataRepository.Order order,
public Stream<String> toValue(
String language,
- DataRepositoryWithBuffer dataRepository,
+ DataRepositoryForBuffer dataRepository,
Map<String, FieldType> dataRowValues,
StandardDataDescription dataDescription
) {
diff --git a/src/main/java/fr/inra/oresing/domain/data/read/query/ComponentOrderByForExport.java b/src/main/java/fr/inra/oresing/domain/data/read/query/ComponentOrderByForExport.java
index 6dd3613..e117881 100644
--- a/src/main/java/fr/inra/oresing/domain/data/read/query/ComponentOrderByForExport.java
+++ b/src/main/java/fr/inra/oresing/domain/data/read/query/ComponentOrderByForExport.java
@@ -7,6 +7,7 @@ import fr.inra.oresing.domain.application.configuration.checker.ReferenceChecker
import fr.inra.oresing.domain.checker.type.DateType;
import fr.inra.oresing.domain.checker.type.FieldType;
import fr.inra.oresing.domain.checker.type.MapType;
+import fr.inra.oresing.domain.repository.data.DataRepositoryForBuffer;
import fr.inra.oresing.persistence.data.read.DataRepositoryWithBuffer;
import java.time.LocalDateTime;
@@ -20,7 +21,7 @@ import java.util.stream.Stream;
public sealed interface ComponentOrderByForExport
permits ComponentOrderBy, ComponentPatternOrderBy, ComponentPatternValueOrderBy, DynamicComponentOrderBy {
- Stream<String> toValue(String language, DataRepositoryWithBuffer dataRepository, Map<String, FieldType> dataRowValues, StandardDataDescription dataDescription);
+ Stream<String> toValue(String language, DataRepositoryForBuffer dataRepository, Map<String, FieldType> dataRowValues, StandardDataDescription dataDescription);
String componentKey();
@@ -28,7 +29,7 @@ public sealed interface ComponentOrderByForExport
default String valueToString(
String language,
- DataRepositoryWithBuffer dataRepository,
+ DataRepositoryForBuffer dataRepository,
StandardDataDescription dataDescription,
FieldType fieldType) {
if (fieldType instanceof MapType mapType) {
diff --git a/src/main/java/fr/inra/oresing/domain/data/read/query/ComponentPatternOrderBy.java b/src/main/java/fr/inra/oresing/domain/data/read/query/ComponentPatternOrderBy.java
index 9c2d972..8d29dc7 100644
--- a/src/main/java/fr/inra/oresing/domain/data/read/query/ComponentPatternOrderBy.java
+++ b/src/main/java/fr/inra/oresing/domain/data/read/query/ComponentPatternOrderBy.java
@@ -3,8 +3,8 @@ package fr.inra.oresing.domain.data.read.query;
import fr.inra.oresing.domain.application.configuration.StandardDataDescription;
import fr.inra.oresing.domain.checker.type.*;
import fr.inra.oresing.domain.data.deposit.context.column.Column;
+import fr.inra.oresing.domain.repository.data.DataRepositoryForBuffer;
import fr.inra.oresing.persistence.DataRepository;
-import fr.inra.oresing.persistence.data.read.DataRepositoryWithBuffer;
import java.util.ArrayList;
import java.util.List;
@@ -16,7 +16,7 @@ public record ComponentPatternOrderBy(String componentKey, String qualifierKey,
ComponentType sqlType,
List<ComponentOrderBy> qualifiersColumns) implements ComponentOrderByForExport {
@Override
- public Stream<String> toValue(String language, DataRepositoryWithBuffer dataRepository, Map<String, FieldType> dataRowValues, StandardDataDescription dataDescription) {
+ public Stream<String> toValue(String language, DataRepositoryForBuffer dataRepository, Map<String, FieldType> dataRowValues, StandardDataDescription dataDescription) {
String componentKey = componentKey();
FieldType fieldType = dataRowValues.get(componentKey);
Optional<MapType> valueOpt = ((ListType) fieldType).getValue().stream().filter(mapType -> qualifierKey().equals(((MapType) mapType).getValue().get(Column.__ORIGINAL_COLUMN_NAME__).toString())).findFirst();
diff --git a/src/main/java/fr/inra/oresing/domain/data/read/query/ComponentPatternValueOrderBy.java b/src/main/java/fr/inra/oresing/domain/data/read/query/ComponentPatternValueOrderBy.java
index 51bdcaf..4555019 100644
--- a/src/main/java/fr/inra/oresing/domain/data/read/query/ComponentPatternValueOrderBy.java
+++ b/src/main/java/fr/inra/oresing/domain/data/read/query/ComponentPatternValueOrderBy.java
@@ -5,8 +5,8 @@ import fr.inra.oresing.domain.checker.type.FieldType;
import fr.inra.oresing.domain.checker.type.ListType;
import fr.inra.oresing.domain.checker.type.MapType;
import fr.inra.oresing.domain.data.deposit.context.column.Column;
+import fr.inra.oresing.domain.repository.data.DataRepositoryForBuffer;
import fr.inra.oresing.persistence.DataRepository;
-import fr.inra.oresing.persistence.data.read.DataRepositoryWithBuffer;
import java.util.*;
import java.util.stream.Stream;
@@ -16,7 +16,7 @@ public record ComponentPatternValueOrderBy(String componentKey, String qualifier
Set<ComponentOrderBy> qualifiersColumns,
Set<ComponentOrderBy> adjacentColumns) implements ComponentOrderByForExport {
@Override
- public Stream<String> toValue(String language, DataRepositoryWithBuffer dataRepository, Map<String, FieldType> dataRowValues, StandardDataDescription dataDescription) {
+ public Stream<String> toValue(String language, DataRepositoryForBuffer dataRepository, Map<String, FieldType> dataRowValues, StandardDataDescription dataDescription) {
String componentKey = componentKey();
ListType fieldType = (ListType) dataRowValues.get(componentKey);
@@ -38,18 +38,18 @@ public record ComponentPatternValueOrderBy(String componentKey, String qualifier
return Stream.empty();
}
- private String getAdacentValue(String language, DataRepositoryWithBuffer dataRepository, StandardDataDescription dataDescription, ComponentOrderBy qualifier, MapType patternMapTypeOpt) {
+ private String getAdacentValue(String language, DataRepositoryForBuffer dataRepository, StandardDataDescription dataDescription, ComponentOrderBy qualifier, MapType patternMapTypeOpt) {
String adjacentKey = qualifier.componentKey().split(Column.COLUMN_IN_COLUMN_SEPARATOR)[1];
FieldType adjacentField = (FieldType) patternMapTypeOpt.getValue().get(adjacentKey);
return valueToString(language, dataRepository, dataDescription, adjacentField);
}
- private String getQualifierValue(String language, DataRepositoryWithBuffer dataRepository, StandardDataDescription dataDescription, ComponentOrderBy qualifier, MapType patternMapTypeOpt) {
+ private String getQualifierValue(String language, DataRepositoryForBuffer dataRepository, StandardDataDescription dataDescription, ComponentOrderBy qualifier, MapType patternMapTypeOpt) {
FieldType adjacentField = (FieldType) patternMapTypeOpt.getValue().get(qualifier.componentKey());
return valueToString(language, dataRepository, dataDescription, adjacentField);
}
- private String getValue(String language, DataRepositoryWithBuffer dataRepository, StandardDataDescription dataDescription, MapType mapType) {
+ private String getValue(String language, DataRepositoryForBuffer dataRepository, StandardDataDescription dataDescription, MapType mapType) {
return valueToString(language, dataRepository, dataDescription, (FieldType) mapType.getValue().get(Column.__VALUE__));
}
diff --git a/src/main/java/fr/inra/oresing/domain/data/read/query/DynamicComponentOrderBy.java b/src/main/java/fr/inra/oresing/domain/data/read/query/DynamicComponentOrderBy.java
index 89e65a2..c8a8aea 100644
--- a/src/main/java/fr/inra/oresing/domain/data/read/query/DynamicComponentOrderBy.java
+++ b/src/main/java/fr/inra/oresing/domain/data/read/query/DynamicComponentOrderBy.java
@@ -3,14 +3,14 @@ package fr.inra.oresing.domain.data.read.query;
import fr.inra.oresing.domain.application.configuration.StandardDataDescription;
import fr.inra.oresing.domain.checker.type.FieldType;
import fr.inra.oresing.domain.checker.type.StringType;
-import fr.inra.oresing.persistence.data.read.DataRepositoryWithBuffer;
+import fr.inra.oresing.domain.repository.data.DataRepositoryForBuffer;
import java.util.Map;
import java.util.stream.Stream;
public record DynamicComponentOrderBy(String componentKey, Map<String, ComponentOrderBy> dynamicColumns) implements ComponentOrderByForExport {
@Override
- public Stream<String> toValue(String language, DataRepositoryWithBuffer dataRepository, Map<String, FieldType> dataRowValues, StandardDataDescription dataDescription) {
+ public Stream<String> toValue(String language, DataRepositoryForBuffer dataRepository, Map<String, FieldType> dataRowValues, StandardDataDescription dataDescription) {
String componentKey = componentKey();
Map<String, StringType> values = (Map<String, StringType>) dataRowValues.get(componentKey).getValue();
return dynamicColumns().keySet().stream()
diff --git a/src/main/java/fr/inra/oresing/domain/exceptions/authorization/AuthorizationRequestException.java b/src/main/java/fr/inra/oresing/domain/exceptions/authorization/AuthorizationRequestException.java
index 04a7872..ea750df 100644
--- a/src/main/java/fr/inra/oresing/domain/exceptions/authorization/AuthorizationRequestException.java
+++ b/src/main/java/fr/inra/oresing/domain/exceptions/authorization/AuthorizationRequestException.java
@@ -17,7 +17,7 @@ public enum AuthorizationRequestException {
BAD_FILE_NAME_START_DATE,
BAD_FILE_NAME_END_DATE,
- INVAALID_FILE_NAME,
+ INVALID_FILE_NAME,
MISSING_REQUIRED_AUTHORIZATION,
NO_RIGHT_ON_TABLE_FOR_DEPOSIT;
diff --git a/src/main/java/fr/inra/oresing/domain/file/FileOrUUID.java b/src/main/java/fr/inra/oresing/domain/file/FileOrUUID.java
index 3dd335d..5c7a5e2 100644
--- a/src/main/java/fr/inra/oresing/domain/file/FileOrUUID.java
+++ b/src/main/java/fr/inra/oresing/domain/file/FileOrUUID.java
@@ -21,6 +21,12 @@ public record FileOrUUID(UUID fileid, BinaryFileDataset binaryfiledataset, Boole
);
}
+ public static FileOrUUID forUUID(UUID id) {
+ return new FileOrUUID(
+ id, null, false
+ );
+ }
+
public FileOrUUID withParams(BinaryFileInfos binaryFileInfos) {
return new FileOrUUID(
fileid(),
@@ -30,17 +36,17 @@ public record FileOrUUID(UUID fileid, BinaryFileDataset binaryfiledataset, Boole
}
- public boolean requiredAuthorizationMatchForFile(final Map<String, Set<String>>requiredAuthorizationInDataBase) {
+ public boolean requiredAuthorizationMatchForFile(final Map<String, Set<String>> requiredAuthorizationInDataBase) {
Optional<Map<String, List<Ltree>>> requiredAuthorizationForFile = Optional.ofNullable(binaryfiledataset())
.map(BinaryFileDataset::getRequiredAuthorizations);
if (requiredAuthorizationForFile.isPresent()) {
for (final Map.Entry<String, List<Ltree>> requiredAuthorizationForFileEntry : requiredAuthorizationForFile.get().entrySet()) {
final String scope = requiredAuthorizationForFileEntry.getKey();
final String ltree = requiredAuthorizationForFileEntry.getValue().getFirst().getSql();
- if(requiredAuthorizationInDataBase.get(scope).stream()
+ if (requiredAuthorizationInDataBase.get(scope).stream()
.noneMatch(pathAuthorized -> ltree.equals(pathAuthorized) ||
- ltree.startsWith(pathAuthorized+Ltree.SEPARATOR))
- ){
+ ltree.startsWith(pathAuthorized + Ltree.SEPARATOR))
+ ) {
return false;
}
}
diff --git a/src/main/java/fr/inra/oresing/domain/repository/data/DataRepository.java b/src/main/java/fr/inra/oresing/domain/repository/data/DataRepository.java
index e68c5bc..1fd274b 100644
--- a/src/main/java/fr/inra/oresing/domain/repository/data/DataRepository.java
+++ b/src/main/java/fr/inra/oresing/domain/repository/data/DataRepository.java
@@ -24,7 +24,7 @@ public interface DataRepository {
ImmutableMap<DataValue.LineIdentityPatternColumnName, UUID> getDataIdPerKeys(String s);
@Transactional(readOnly = true)
- Stream<DataValue> findAllByReferenceTypeStream(String ref);
+ Stream<DataValue> findAllByReferenceTypeStream(String referenceName);
@Transactional(readOnly = true)
Stream<DataValue> findAllByReferenceTypeWithReferencingReferencesStream(final String refType, final MultiValueMap<String, String> params);
@@ -42,4 +42,6 @@ public interface DataRepository {
Flux<FileContent> getStoredData(Application application, String dataName);
void flush();
+
+ Map<String, Map<String, String>> findDisplayByNaturalKey(String replace);
}
diff --git a/src/main/java/fr/inra/oresing/domain/repository/data/DataRepositoryForBuffer.java b/src/main/java/fr/inra/oresing/domain/repository/data/DataRepositoryForBuffer.java
index eb1e1c7..e914ed2 100644
--- a/src/main/java/fr/inra/oresing/domain/repository/data/DataRepositoryForBuffer.java
+++ b/src/main/java/fr/inra/oresing/domain/repository/data/DataRepositoryForBuffer.java
@@ -1,10 +1,12 @@
package fr.inra.oresing.domain.repository.data;
import fr.inra.oresing.domain.application.configuration.Ltree;
+import fr.inra.oresing.domain.data.DataValue;
import fr.inra.oresing.domain.exceptions.SiOreIllegalArgumentException;
import java.util.List;
import java.util.Map;
+import java.util.stream.Stream;
public interface DataRepositoryForBuffer {
Map<String, Map<String, String>> findDisplayByReferenceType(String referenceType);
@@ -14,4 +16,8 @@ public interface DataRepositoryForBuffer {
String findDisplayByReferenceTypeAndNaturalKeyAndLocale(String referenceType, String naturalKey, String locale);
Map<String, List<Ltree>> checkHierarchicalKey(Map<String, List<Ltree>> requiredAuthorizations) throws SiOreIllegalArgumentException;
+
+ List<Ltree> getHierarchicalKeyForEntry(Map.Entry<String, List<Ltree>> requiredAuthorizationByReference);
+
+ Stream<DataValue> findAllByReferenceTypeStream(String referenceName);
}
diff --git a/src/main/java/fr/inra/oresing/domain/services/file/BinaryFileService.java b/src/main/java/fr/inra/oresing/domain/services/file/BinaryFileService.java
index 544bd28..a966ff3 100644
--- a/src/main/java/fr/inra/oresing/domain/services/file/BinaryFileService.java
+++ b/src/main/java/fr/inra/oresing/domain/services/file/BinaryFileService.java
@@ -32,7 +32,12 @@ public interface BinaryFileService extends ServiceContainerBean {
ReportErrors findPublishedVersion(String nameOrId, String dataType, FileOrUUID params, Set<BinaryFile> filesToStore, boolean searchOverlaps);
- List<BinaryFile> getFilesOnRepository(String nameOrId, String datatype, BinaryFileDataset fileDatasetID, boolean overlap);
+ List<BinaryFile> getFilesOnRepository(
+ String nameOrId,
+ String datatype,
+ BinaryFileDataset fileDatasetID,
+ boolean overlap
+ );
AdditionalBinaryFileResult getAdditionalBinaryFileResult(
AdditionalBinaryFile additionalBinaryFile,
diff --git a/src/main/java/fr/inra/oresing/persistence/DataRepository.java b/src/main/java/fr/inra/oresing/persistence/DataRepository.java
index 93ab3d9..a5397c5 100644
--- a/src/main/java/fr/inra/oresing/persistence/DataRepository.java
+++ b/src/main/java/fr/inra/oresing/persistence/DataRepository.java
@@ -201,7 +201,7 @@ public class DataRepository extends JsonTableInApplicationSchemaRepositoryTempla
return getNamedParameterJdbcTemplate().queryForList(query, paramSource, UUID.class);
}
- public Stream<DataValue> findAllByReferenceTypeStream(final String refType) {
+ public Stream<DataValue> findAllByReferenceTypeStream(final String referenceName) {
String query = """
SELECT DISTINCT '%1$s' as "@class",
to_jsonb(t) as json
@@ -212,7 +212,7 @@ public class DataRepository extends JsonTableInApplicationSchemaRepositoryTempla
"""
.formatted(DataValue.class.getName(), getTable().getSqlIdentifier());
final MapSqlParameterSource paramSource = new MapSqlParameterSource(APPLICATION_ID, getApplication().getId())
- .addValue(REF_TYPE, refType);
+ .addValue(REF_TYPE, referenceName);
return getNamedParameterJdbcTemplate()
.queryForStream(query, paramSource, getJsonRowMapper());
}
diff --git a/src/main/java/fr/inra/oresing/persistence/DataRow.java b/src/main/java/fr/inra/oresing/persistence/DataRow.java
index 20beaa7..fadfcfc 100644
--- a/src/main/java/fr/inra/oresing/persistence/DataRow.java
+++ b/src/main/java/fr/inra/oresing/persistence/DataRow.java
@@ -15,9 +15,15 @@ import java.util.stream.Collectors;
/**
* @param allPatternColumnNames Long totalRows;Long rowNumber;
*/
-public record DataRow(List<String> rowId, List<String> patternColumnName, Ltree naturalKey, Ltree hierarchicalKey,
- Map<String, FieldType> values, Map<String, Map<String, RefsLinkedToValue>> refsLinkedTo,
- List<String> allPatternColumnNames) {
+public record DataRow(
+ List<String> rowId,
+ List<String> patternColumnName,
+ Ltree naturalKey,
+ Ltree hierarchicalKey,
+ Map<String, FieldType> values,
+ Map<String, Map<String, RefsLinkedToValue>> refsLinkedTo,
+ List<String> allPatternColumnNames
+) {
public static DataRow of(Optional<StandardDataDescription> application, DataRows dataRows) {
List<String> patternComponentKeys = application
.map(StandardDataDescription::componentDescriptions)
diff --git a/src/main/java/fr/inra/oresing/persistence/data/read/DataRepositoryWithBuffer.java b/src/main/java/fr/inra/oresing/persistence/data/read/DataRepositoryWithBuffer.java
index 039abe4..8ba3b10 100644
--- a/src/main/java/fr/inra/oresing/persistence/data/read/DataRepositoryWithBuffer.java
+++ b/src/main/java/fr/inra/oresing/persistence/data/read/DataRepositoryWithBuffer.java
@@ -3,9 +3,10 @@ package fr.inra.oresing.persistence.data.read;
import fr.inra.oresing.domain.application.Application;
import fr.inra.oresing.domain.application.configuration.Ltree;
import fr.inra.oresing.domain.application.configuration.Node;
+import fr.inra.oresing.domain.data.DataValue;
import fr.inra.oresing.domain.exceptions.OreSiTechnicalException;
import fr.inra.oresing.domain.exceptions.SiOreIllegalArgumentException;
-import fr.inra.oresing.persistence.DataRepository;
+import fr.inra.oresing.domain.repository.data.DataRepository;
import java.io.*;
import java.nio.file.*;
@@ -15,7 +16,11 @@ import java.util.function.Function;
import java.util.stream.Collectors;
import java.util.stream.Stream;
-public record DataRepositoryWithBuffer(Application application, DataRepository repository, Path tempDir)
+public record DataRepositoryWithBuffer(
+ Application application,
+ DataRepository repository,
+ Path tempDir
+)
implements fr.inra.oresing.domain.repository.data.DataRepositoryForBuffer {
public static final String PREFIX_FOR_HIERARCHICAL = "hierarchical";
@@ -87,7 +92,7 @@ public record DataRepositoryWithBuffer(Application application, DataRepository r
if (hierarchicalKey == null) {
String availableKeysMessage = String.join(", ", availableKeys);
- throw new IllegalArgumentException(
+ throw new IllegalArgumentException(//TODO throw sioretechnicalException
String.format("Clé non trouvée pour le type de référence: %s, clé: %s. Clés disponibles: %s",
referenceType, keyForScope, availableKeysMessage)
);
@@ -206,4 +211,9 @@ public record DataRepositoryWithBuffer(Application application, DataRepository r
throw new UncheckedIOException("Erreur lors du nettoyage du répertoire temporaire", e);
}
}
+
+ @Override
+ public Stream<DataValue> findAllByReferenceTypeStream(String referenceName) {
+ return repository().findAllByReferenceTypeStream(referenceName);
+ }
}
\ No newline at end of file
diff --git a/src/main/java/fr/inra/oresing/rest/OreSiResources.java b/src/main/java/fr/inra/oresing/rest/OreSiResources.java
index 2049ba9..181fa7f 100644
--- a/src/main/java/fr/inra/oresing/rest/OreSiResources.java
+++ b/src/main/java/fr/inra/oresing/rest/OreSiResources.java
@@ -11,6 +11,10 @@ import fr.inra.oresing.domain.additionalfiles.AdditionalFilesInfos;
import fr.inra.oresing.domain.application.Application;
import fr.inra.oresing.domain.application.ApplicationInformation;
import fr.inra.oresing.domain.application.configuration.*;
+import fr.inra.oresing.domain.authorization.privilegeassessor.exception.NotApplicationCanDeleteReferencesRightsException;
+import fr.inra.oresing.domain.authorization.privilegeassessor.exception.NotApplicationDataWriterForPublishException;
+import fr.inra.oresing.domain.authorization.privilegeassessor.role.ApplicationDataDelete;
+import fr.inra.oresing.domain.authorization.privilegeassessor.role.PrivilegeApplicationDomain;
import fr.inra.oresing.domain.chart.OreSiSynthesis;
import fr.inra.oresing.domain.checker.InvalidDatasetContentException;
import fr.inra.oresing.domain.checker.LineChecker;
@@ -28,11 +32,10 @@ import fr.inra.oresing.domain.exceptions.binaryfile.binaryfile.BadFileOrUUIDQuer
import fr.inra.oresing.domain.exceptions.data.data.BadDownloadDatasetQuery;
import fr.inra.oresing.domain.exceptions.data.data.DeleteOnrepositoryApplicationNotAllowedException;
import fr.inra.oresing.domain.file.FileOrUUID;
+import fr.inra.oresing.domain.repository.data.DataRepositoryForBuffer;
import fr.inra.oresing.persistence.DataRow;
import fr.inra.oresing.persistence.JsonRowMapper;
-import fr.inra.oresing.persistence.OreSiRepository;
import fr.inra.oresing.persistence.UserRepository;
-import fr.inra.oresing.persistence.data.read.DataRepositoryWithBuffer;
import fr.inra.oresing.rest.binaryFile.BinaryFileService;
import fr.inra.oresing.rest.data.publication.*;
import fr.inra.oresing.domain.exceptions.configuration.BadApplicationConfigurationException;
@@ -68,7 +71,6 @@ import lombok.extern.slf4j.Slf4j;
import org.apache.commons.collections4.MapUtils;
import org.apache.commons.io.output.TeeOutputStream;
import org.springframework.beans.factory.annotation.Autowired;
-import org.springframework.context.annotation.Lazy;
import org.springframework.http.HttpHeaders;
import org.springframework.http.HttpStatus;
import org.springframework.http.MediaType;
@@ -173,34 +175,49 @@ public class OreSiResources implements ServiceContainerBean {
public ResponseEntity<String> removeFile(@PathVariable("name") final String applicationName,
@PathVariable("id") final UUID id) {
Application application = serviceContainer.applicationService().getApplication(applicationName);
- StoreFile storeFile = serviceContainer.versioningService().getStoreFile(application,
+ StoreFile storeFile = serviceContainer.versioningService().getStoreFile(
+ application,
null,
- """
- {"fileid": "%s"}""".formatted(id), null);
+ FileOrUUID.forUUID(id),
+ null,
+ null
+ );
Optional<UUID> fileId = Optional.ofNullable(storeFile)
- .map(State::params)
+ .map(State::fileOrUuid)
.map(FileOrUUID::fileid);
if (fileId.isEmpty()) {
throw new SiOreIllegalArgumentException(SiOreIllegalArgumentException.NO_FILE_To_DELETE, Map.of("fileId", id));
}
- Boolean canDelete = Optional.of(storeFile)
+ String dataName = Optional.of(storeFile)
.map(StoreFile::builder)
- .map(AuthorizationPublicationService::getAuthorizations)
- .map(AuthorizationForUser::canDelete)
- .orElse(false);
+ .map(AuthorizationPublicationService::getDataName)
+ .orElse("notFoundDataName");
+ ApplicationDataDelete applicationDataDelete = serviceContainer.authorizationService().getPrivilegeAssessorForApplication(PrivilegeApplicationDomain.DATA_ACCESS, application)
+ .forDataDelete(dataName);
+ storeFile = serviceContainer.versioningService().getStoreFile(
+ application,
+ dataName,
+ storeFile.fileOrUuid(),
+ null,
+ applicationDataDelete
+ );
+
+ StoreFile finalStoreFile = storeFile;
+ Boolean canDelete = applicationDataDelete.canDelete(finalStoreFile.fileOrUuid());
if (!canDelete) {
- String dataName = Optional.of(storeFile)
- .map(StoreFile::builder)
- .map(AuthorizationPublicationService::getDataName)
- .orElse("notFoundDataname");
throw new NotApplicationCanDeleteRightsException(applicationName, dataName);
}
- DataVersioningResult dataVersioningResult = serviceContainer.versioningService().unPublishVersionBeforeDelete(applicationName, id);
+ if(!storeFile.builder().getFileOrUUID().topublish()) {
+ if (!applicationDataDelete.hasRightForPublishOrUnPublish(storeFile.fileOrUuid())) {
+ throw new NotApplicationDataWriterForPublishException(applicationName, dataName);
+ }
+ DataVersioningResult dataVersioningResult = serviceContainer.versioningService().unPublishVersionBeforeDelete(applicationName, id);
+ }
Optional<UUID> uuid = serviceContainer.binaryFileService().removeFile(application, id);
if (uuid.isPresent()) {
return ResponseEntity.ok(id.toString());
} else {
- return ResponseEntity.notFound().build();
+ throw new NotApplicationCanDeleteRightsException(applicationName, dataName);
}
}
@@ -209,6 +226,7 @@ public class OreSiResources implements ServiceContainerBean {
@PathVariable("dataType") final String dataType,
@RequestParam("repositoryId") final String repositoryId) {
final BinaryFileDataset binaryFileDataset = BinaryFileService.deserialiseBinaryFileDatasetQuery(dataType, repositoryId);
+ Application application = serviceContainer.applicationService().getApplication(nameOrId);
final List<BinaryFile> files = serviceContainer.binaryFileService().getFilesOnRepository(nameOrId, dataType, binaryFileDataset, false);
return ResponseEntity.ok(files);
}
@@ -859,7 +877,7 @@ public class OreSiResources implements ServiceContainerBean {
} else {
//TODO on est dans le cas ou aucun computationChecker reference n'est décrit : authorizationscope n'est pas un referentiel
}
- DataRepositoryWithBuffer dataRepositoryWithBuffer = serviceContainer.dataService().getNewDataRepositoryWithBuffer(application);
+ DataRepositoryForBuffer dataRepositoryWithBuffer = serviceContainer.dataService().getDataRepositoryWithBuffer(application);
final List<DataRowResult> dataRowResults = data.stream()
.map(dataRow -> DataRowResult.of(
@@ -902,20 +920,13 @@ public class OreSiResources implements ServiceContainerBean {
@DeleteMapping(value = "/applications/{nameOrId}/data/{dataType}", produces = MediaType.TEXT_PLAIN_VALUE)
public ResponseEntity<String> deleteData(
@PathVariable("nameOrId") final String nameOrId,
- @PathVariable("dataType") final String dataType,
+ @PathVariable("dataType") final String dataName,
@RequestParam(value = "downloadDatasetQuery", required = false) final String params) {
+ Application application = serviceContainer.applicationService().getApplication(nameOrId);
+ ApplicationDataDelete applicationDataDelete = serviceContainer.authorizationService().getPrivilegeAssessorForApplication(PrivilegeApplicationDomain.DATA_ACCESS, application)
+ .forDataDelete(dataName);
- final ResponseEntity<String> resposeEntity = null;
- final boolean deleteOnrepositoryApplicationNotAllowed = serviceContainer.applicationService().getApplication(nameOrId)
- .findSubmission(dataType)
- .map(Submission::strategy)
- .map(SubmissionType.OA_VERSIONING::equals)
- .isPresent();
- if (deleteOnrepositoryApplicationNotAllowed) {
- throw new DeleteOnrepositoryApplicationNotAllowedException();
- }
-
- final fr.inra.oresing.domain.data.read.query.DownloadDatasetQuery downloadDatasetQuery = deserialiseParamDownloadDatasetQuery(params, nameOrId, dataType, false);
+ final fr.inra.oresing.domain.data.read.query.DownloadDatasetQuery downloadDatasetQuery = deserialiseParamDownloadDatasetQuery(params, nameOrId, dataName, false);
final List<UUID> deletedData = serviceContainer.dataService().deleteData(downloadDatasetQuery);
return ResponseEntity.ok(deletedData.stream().map(UUID::toString).collect(Collectors.joining(",")));
diff --git a/src/main/java/fr/inra/oresing/rest/binaryFile/BinaryFileService.java b/src/main/java/fr/inra/oresing/rest/binaryFile/BinaryFileService.java
index 538af94..cc022a7 100644
--- a/src/main/java/fr/inra/oresing/rest/binaryFile/BinaryFileService.java
+++ b/src/main/java/fr/inra/oresing/rest/binaryFile/BinaryFileService.java
@@ -11,15 +11,16 @@ import fr.inra.oresing.domain.data.deposit.validation.DefaultValidationCheckResu
import fr.inra.oresing.domain.exceptions.ReportErrors;
import fr.inra.oresing.domain.exceptions.data.data.BadBinaryFileDatasetQuery;
import fr.inra.oresing.domain.file.FileOrUUID;
+import fr.inra.oresing.domain.repository.data.DataRepositoryForBuffer;
import fr.inra.oresing.domain.repository.file.BinaryFileRepository;
import fr.inra.oresing.persistence.*;
+import fr.inra.oresing.persistence.data.read.DataRepositoryWithBuffer;
import fr.inra.oresing.rest.OreSiApiRequestContext;
import fr.inra.oresing.rest.model.additionalfiles.AdditionalBinaryFileResult;
import fr.inra.oresing.rest.model.authorization.AuthorizationParsed;
import fr.inra.oresing.rest.services.ServiceContainer;
import lombok.extern.slf4j.Slf4j;
import org.springframework.beans.factory.annotation.Autowired;
-import org.springframework.context.annotation.Lazy;
import org.springframework.stereotype.Component;
import org.springframework.transaction.annotation.Transactional;
import org.springframework.web.multipart.MultipartFile;
@@ -102,7 +103,9 @@ public class BinaryFileService implements fr.inra.oresing.domain.services.file.B
public Optional<UUID> removeFile(Application application, UUID id) {
Function<BinaryFile, UUID> deleteBinaryFile = binaryFile -> getBinaryFileRepository(application).delete(binaryFile.getId()) ? binaryFile.getId() : null;
return getFile(application.getName(), id)
- .map(deleteBinaryFile);
+ .map(BinaryFile::getId)
+ .map(getBinaryFileRepository(application)::delete)
+ .orElse(false)?Optional.of(id):Optional.empty();
}
@Override
@@ -143,9 +146,11 @@ public class BinaryFileService implements fr.inra.oresing.domain.services.file.B
}
@Override
- public List<BinaryFile> getFilesOnRepository(final String nameOrId, final String datatype, final BinaryFileDataset fileDatasetID, final boolean overlap) {
+ public List<BinaryFile> getFilesOnRepository(final String nameOrId, final String datatype, final BinaryFileDataset binaryFileDataset, final boolean overlap) {
authenticationService.setRoleForClient();
- return getBinaryFileRepository(nameOrId).findByBinaryFileDataset(datatype, fileDatasetID, overlap);
+ Application application= serviceContainer.applicationService().getApplication(nameOrId);
+ DataRepositoryForBuffer dataRepositoryForBuffer = serviceContainer.dataService().getDataRepositoryWithBuffer(application);
+ return getBinaryFileRepository(nameOrId).findByBinaryFileDataset(datatype, binaryFileDataset.testrequiredAuthorizationsAndReturnHierarchicalKeys(dataRepositoryForBuffer), overlap);
}
@Override
diff --git a/src/main/java/fr/inra/oresing/rest/data/DataService.java b/src/main/java/fr/inra/oresing/rest/data/DataService.java
index 500b584..e81dfec 100644
--- a/src/main/java/fr/inra/oresing/rest/data/DataService.java
+++ b/src/main/java/fr/inra/oresing/rest/data/DataService.java
@@ -11,7 +11,7 @@ import fr.inra.oresing.domain.application.Application;
import fr.inra.oresing.domain.application.configuration.*;
import fr.inra.oresing.domain.application.configuration.checker.CheckerDescription;
import fr.inra.oresing.domain.application.configuration.internationalization.InternationalizationTitle;
-import fr.inra.oresing.domain.authorization.privilegeassessor.role.ApplicationReader;
+import fr.inra.oresing.domain.authorization.privilegeassessor.role.ApplicationDataReader;
import fr.inra.oresing.domain.checker.CheckerFactory;
import fr.inra.oresing.domain.checker.InvalidDatasetContentException;
import fr.inra.oresing.domain.checker.LineChecker;
@@ -30,6 +30,7 @@ import fr.inra.oresing.domain.exceptions.SiOreIllegalArgumentException;
import fr.inra.oresing.domain.filesenderclient.FileSenderInternationalisation;
import fr.inra.oresing.domain.filesenderclient.FileSenderInternationalisationForBuildBundleReport;
import fr.inra.oresing.domain.filesenderclient.FileSenderInternationalisationForDownloadDatasetQuery;
+import fr.inra.oresing.domain.repository.data.DataRepositoryForBuffer;
import fr.inra.oresing.persistence.data.read.bundle.FileContent;
import fr.inra.oresing.domain.exceptions.OreSiTechnicalException;
import fr.inra.oresing.domain.file.DataFile;
@@ -61,9 +62,7 @@ import reactor.core.publisher.Mono;
import java.io.*;
import java.net.URL;
import java.nio.charset.StandardCharsets;
-import java.nio.file.Files;
import java.nio.file.Path;
-import java.nio.file.attribute.PosixFilePermission;
import java.util.*;
import java.util.concurrent.atomic.AtomicLong;
import java.util.function.Consumer;
@@ -553,7 +552,7 @@ public class DataService implements ServiceContainerBean {
.withDownloadDatasetQuery(downloadDatasetQuery)
.withReferenceService(this)
.withOutputStream(outputStream)
- .onRepositories(new DataRepositoryWithBuffer(application, dataRepository), null)
+ .onRepositories(getDataRepositoryWithBuffer(application), null)
.addDatas(datas)
.buildDataCsv(downloadDatasetQuery.getLanguage(), dataDescription, downloadDatasetQuery.horizontalDisplay());
}
@@ -587,6 +586,10 @@ public class DataService implements ServiceContainerBean {
this.serviceContainer = serviceContainer;
}
+ public DataRepositoryForBuffer getDataRepositoryWithBuffer(Application application) {
+ return new DataRepositoryWithBuffer(application, dataRepository);
+ }
+
private record BuildColumns(PatternColumnFactory patternColumnFactory, ImmutableSet<Column> columns) {
}
@@ -620,7 +623,7 @@ public class DataService implements ServiceContainerBean {
DownloadDatasetQuery downloadDatasetQuery) {
Application application = downloadDatasetQuery.application();
DataRepository dataRepository = repository.getRepository(downloadDatasetQuery.application()).data();
- DataRepositoryWithBuffer dataRepositoryWithBuffer = new DataRepositoryWithBuffer(application, dataRepository);
+ DataRepositoryForBuffer dataRepositoryWithBuffer = getDataRepositoryWithBuffer(application);
serviceContainer.authenticationService().setRoleForClient();
@@ -698,7 +701,7 @@ public class DataService implements ServiceContainerBean {
public UUIDsfromData addDatacsv(
final ZipOutputStream zipOutputStream,
- DataRepositoryWithBuffer dataRepositoryWithBuffer,
+ DataRepositoryForBuffer dataRepositoryWithBuffer,
final DownloadDatasetQuery downloadDatasetQuery,
String fileNamePattern) {
final Flux<DataRow> datas = serviceContainer.dataService().findDataFlux(downloadDatasetQuery);
@@ -719,7 +722,7 @@ public class DataService implements ServiceContainerBean {
}
public List<DataRow> findData(final DownloadDatasetQuery downloadDatasetQuery) {
- ApplicationReader applicationReader = serviceContainer.authorizationService()
+ ApplicationDataReader applicationReader = serviceContainer.authorizationService()
.getPrivilegeAssessorForApplication(DATA_READ, downloadDatasetQuery.application())
.forDataRead(downloadDatasetQuery.dataName());
return serviceContainer.dataService().findDataFlux(downloadDatasetQuery).collectList().block();
@@ -1030,10 +1033,6 @@ public class DataService implements ServiceContainerBean {
return repository.getRepository(application).data().delete(downloadDatasetQuery);
}
- public DataRepositoryWithBuffer getNewDataRepositoryWithBuffer(Application application) {
- return new DataRepositoryWithBuffer(application, repository.getRepository(application).data());
- }
-
public Map<Ltree, List<DataValue>> getReferenceDisplaysById(final Application application, final Set<String> listOfDataIds) {
return repository.getRepository(application).data().getReferenceDisplaysById(listOfDataIds);
}
diff --git a/src/main/java/fr/inra/oresing/rest/data/VersioningService.java b/src/main/java/fr/inra/oresing/rest/data/VersioningService.java
index 1fc5d2c..5fa6100 100644
--- a/src/main/java/fr/inra/oresing/rest/data/VersioningService.java
+++ b/src/main/java/fr/inra/oresing/rest/data/VersioningService.java
@@ -1,13 +1,18 @@
package fr.inra.oresing.rest.data;
+import com.fasterxml.jackson.core.JsonProcessingException;
+import com.fasterxml.jackson.databind.ObjectMapper;
import fr.inra.oresing.domain.BinaryFile;
import fr.inra.oresing.domain.BinaryFileDataset;
import fr.inra.oresing.domain.application.Application;
-import fr.inra.oresing.domain.application.configuration.Ltree;
+import fr.inra.oresing.domain.authorization.privilegeassessor.role.ApplicationDataWriter;
+import fr.inra.oresing.domain.authorization.privilegeassessor.role.PrivilegeApplicationDomain;
import fr.inra.oresing.domain.exceptions.ReportErrors;
+import fr.inra.oresing.domain.exceptions.binaryfile.binaryfile.BadFileOrUUIDQuery;
import fr.inra.oresing.domain.file.DataFile;
import fr.inra.oresing.domain.file.FileOrUUID;
import fr.inra.oresing.domain.repository.data.DataRepository;
+import fr.inra.oresing.domain.repository.data.DataRepositoryForBuffer;
import fr.inra.oresing.domain.repository.file.BinaryFileRepository;
import fr.inra.oresing.persistence.*;
import fr.inra.oresing.rest.data.publication.*;
@@ -16,7 +21,6 @@ import fr.inra.oresing.rest.services.ServiceContainer;
import fr.inra.oresing.rest.services.ServiceContainerBean;
import lombok.extern.slf4j.Slf4j;
import org.springframework.beans.factory.annotation.Autowired;
-import org.springframework.context.annotation.Lazy;
import org.springframework.stereotype.Component;
import org.springframework.transaction.annotation.Transactional;
import org.springframework.web.multipart.MultipartFile;
@@ -24,6 +28,7 @@ import org.springframework.web.multipart.MultipartFile;
import java.io.IOException;
import java.util.*;
import java.util.function.Function;
+import java.util.function.Predicate;
@Slf4j
@Component
@@ -41,25 +46,32 @@ public class VersioningService implements ServiceContainerBean {
@Transactional
public DataVersioningResult createData(String nameOrId, String dataName, MultipartFile file, String params) throws IOException {
Application application = serviceContainer.applicationService().getApplication(nameOrId);
+ String fileName = file == null ? null : file.getOriginalFilename();
+ Optional<FileOrUUID> fileOrUUIDOpt = Optional.ofNullable(params)
+ .filter(Objects::nonNull)
+ .filter(Predicate.not("undefined"::equals))
+ .map(json -> {
+ try {
+ return new ObjectMapper().readValue(params, FileOrUUID.class);
+ } catch (JsonProcessingException e) {
+ throw new BadFileOrUUIDQuery(e.getMessage());
+ }
+ });
+ Boolean toPublish = fileOrUUIDOpt
+ .map(FileOrUUID::topublish)
+ .orElse(false);
+ ApplicationDataWriter applicationDataWriter = serviceContainer.authorizationService().getPrivilegeAssessorForApplication(PrivilegeApplicationDomain.DATA_WRITE, application)
+ .forDataWrite(dataName, toPublish);
Set<BinaryFile> filesToStore = new HashSet<>();
- State state = getStoreFile(application, dataName, params, file == null ? null : file.getOriginalFilename())
+ DataRepositoryForBuffer dataRepositoryWithBuffer = serviceContainer.dataService().getDataRepositoryWithBuffer(application);
+ State state = getStoreFile(application, dataName, fileOrUUIDOpt.orElse(null), fileName, applicationDataWriter)
.loadOrCreateFile(file, binaryFileRepository(application), serviceContainer.binaryFileService());
if (state instanceof UnPublishedVersions unPublishedVersions) {
FileOrUUID fileOrUUID = unPublishedVersions
.unPublishVersions(filesToStore, dataRepository(application), binaryFileRepository(application), serviceContainer.synthesisService())
- .checkPublicationRights(filesToStore, dataRepository(application), serviceContainer.binaryFileService(), binaryFileRepository(application));
+ .checkAndStoreFile(filesToStore, serviceContainer.binaryFileService(), binaryFileRepository(application));
- UUID dataId;
- if (fileOrUUID.topublish()) {
- dataId = serviceContainer.dataService().addData(application, dataName, new DataFile(fileOrUUID, state.binaryFile().getFileData()));
- } else {
- dataId = state.binaryFile().getId();
- }
- if (dataId != null && state.isRepository()) {
- BinaryFile binaryFile = state.binaryFile();
- binaryFile.markAsPublished(fileOrUUID.topublish());
- dataId = binaryFileRepository(application).store(binaryFile);
- }
+ UUID dataId = publishData(dataName, fileOrUUID, application, state);
final List<ApplicationResult.DataSynthesis> dataSynthesis = Optional.ofNullable(serviceContainer.dataService().getReferenceSynthesis(application)).orElseGet(List::of);
return DataVersioningResult.of(nameOrId, dataName, dataId, dataSynthesis);
}
@@ -68,21 +80,41 @@ public class VersioningService implements ServiceContainerBean {
}
+ private UUID publishData(String dataName, FileOrUUID fileOrUUID, Application application, State state) throws IOException {
+ UUID dataId;
+ if (fileOrUUID.topublish()) {
+ dataId = serviceContainer.dataService().addData(application, dataName, new DataFile(fileOrUUID, state.binaryFile().getFileData()));
+ } else {
+ dataId = state.binaryFile().getId();
+ }
+ if (dataId != null && state.isRepository()) {
+ BinaryFile binaryFile = state.binaryFile();
+ binaryFile.markAsPublished(fileOrUUID.topublish());
+ dataId = binaryFileRepository(application).store(binaryFile);
+ }
+ return dataId;
+ }
+
- public StoreFile getStoreFile(Application application, String dataName, String params, String fileName) {
+ public StoreFile getStoreFile(
+ Application application,
+ String dataName,
+ FileOrUUID fileOrUUID,
+ String fileName,
+ ApplicationDataWriter applicationDataWriter) {
+ DataRepositoryForBuffer dataRepositoryWithBuffer = serviceContainer.dataService().getDataRepositoryWithBuffer(application);
ReportErrors errors = new ReportErrors(jsonRowMapper);
- Function<Map<String, List<Ltree>>, Map<String, List<Ltree>>> requiredAuthorizationResolver = ra -> dataRepository(application).resolveRequiredAuthorizations(ra);
Function<UUID, Optional<BinaryFile>> resolveFileById = uuid -> binaryFileRepository(application).tryFindById(uuid);
return AuthorizationPublicationServiceBuilder.BUILDER(
errors,
application,
dataName,
fileName,
- params,
- requiredAuthorizationResolver,
+ fileOrUUID,
+ applicationDataWriter,
resolveFileById
)
- .buildAuthorizationForUserService(userRepository, serviceContainer.authorizationService());
+ .testAndBuild(dataRepositoryWithBuffer);
}
@Transactional
diff --git a/src/main/java/fr/inra/oresing/rest/data/extraction/DataCsvBuilder.java b/src/main/java/fr/inra/oresing/rest/data/extraction/DataCsvBuilder.java
index 04f5b27..20ced96 100644
--- a/src/main/java/fr/inra/oresing/rest/data/extraction/DataCsvBuilder.java
+++ b/src/main/java/fr/inra/oresing/rest/data/extraction/DataCsvBuilder.java
@@ -11,8 +11,8 @@ import fr.inra.oresing.domain.checker.type.*;
import fr.inra.oresing.domain.data.UUIDsfromData;
import fr.inra.oresing.domain.data.deposit.context.DataImporterContext;
import fr.inra.oresing.domain.data.read.query.*;
+import fr.inra.oresing.domain.repository.data.DataRepositoryForBuffer;
import fr.inra.oresing.persistence.*;
-import fr.inra.oresing.persistence.data.read.DataRepositoryWithBuffer;
import fr.inra.oresing.rest.data.DataService;
import org.apache.commons.csv.CSVFormat;
import org.slf4j.Logger;
@@ -36,7 +36,7 @@ public class DataCsvBuilder {
private static final Logger log = LoggerFactory.getLogger(DataCsvBuilder.class);
private DownloadDatasetQuery downloadDatasetQuery;
- private DataRepositoryWithBuffer dataRepositoryWithBuffer;
+ private DataRepositoryForBuffer dataRepositoryForBuffer;
private Flux<DataRow> datas;
private OutputStream outputStream;
@@ -86,8 +86,8 @@ public class DataCsvBuilder {
return this;
}
- public DataCsvBuilder onRepositories(DataRepositoryWithBuffer DataRepositoryWithBuffer, AdditionalFileRepository additionalFileRepository) {
- this.dataRepositoryWithBuffer = DataRepositoryWithBuffer;
+ public DataCsvBuilder onRepositories(DataRepositoryForBuffer DataRepositoryWithBuffer, AdditionalFileRepository additionalFileRepository) {
+ this.dataRepositoryForBuffer = DataRepositoryWithBuffer;
return this;
}
@@ -183,12 +183,12 @@ public class DataCsvBuilder {
writer,
comparator,
getInternationalizedHeader,
- dataRepositoryWithBuffer,
+ dataRepositoryForBuffer,
dataDescription,
internationalizedSortedColumns,
horizontalDisplay
);
- DataCsvRowBuilder dataCsvRowBuilder = new DataCsvRowBuilder(language, dataRepositoryWithBuffer, dataDescription, horizontalDisplay);
+ DataCsvRowBuilder dataCsvRowBuilder = new DataCsvRowBuilder(language, dataRepositoryForBuffer, dataDescription, horizontalDisplay);
datas
.map(dataCsvHeaderWriter::writeHeader)
.map(dataRow -> addRefsLinkedTo(dataRow, uuiDsfromData))
diff --git a/src/main/java/fr/inra/oresing/rest/data/extraction/DataCsvHeaderWriter.java b/src/main/java/fr/inra/oresing/rest/data/extraction/DataCsvHeaderWriter.java
index eae09b3..58672f5 100644
--- a/src/main/java/fr/inra/oresing/rest/data/extraction/DataCsvHeaderWriter.java
+++ b/src/main/java/fr/inra/oresing/rest/data/extraction/DataCsvHeaderWriter.java
@@ -5,6 +5,7 @@ import fr.inra.oresing.domain.application.configuration.*;
import fr.inra.oresing.domain.data.DataColumn;
import fr.inra.oresing.domain.data.deposit.context.column.Column;
import fr.inra.oresing.domain.data.read.query.*;
+import fr.inra.oresing.domain.repository.data.DataRepositoryForBuffer;
import fr.inra.oresing.persistence.DataRepository;
import fr.inra.oresing.persistence.DataRow;
import fr.inra.oresing.persistence.data.read.DataRepositoryWithBuffer;
@@ -19,7 +20,7 @@ public record DataCsvHeaderWriter(
CSVWriter writer,
Comparator<ComponentOrderByForExport> comparator,
Function<String, String> getInternationalizedHeader,
- DataRepositoryWithBuffer dataRepositoryWithBuffer,
+ DataRepositoryForBuffer dataRepositoryWithBuffer,
List<ComponentOrderByForExport> orderedColumns,
StandardDataDescription dataDescription,
Map<String, Configuration.InternationalizedSortedColumn> internationalizedSortedColumns,
@@ -28,7 +29,7 @@ public record DataCsvHeaderWriter(
CSVWriter writer,
Comparator<ComponentOrderByForExport> comparator,
Function<String, String> getInternationalizedHeader,
- DataRepositoryWithBuffer dataRepositoryWithBuffer,
+ DataRepositoryForBuffer dataRepositoryWithBuffer,
StandardDataDescription dataDescription,
Map<String, Configuration.InternationalizedSortedColumn> internationalizedSortedColumns,
boolean horizontalDisplay) {
@@ -188,7 +189,8 @@ public record DataCsvHeaderWriter(
String referenceName = dynamicComponent.reference();
String referenceColumnToLookForHeader = dynamicComponent.referenceColumnToLookForHeader();
ComponentType typeForComponentKey = dataDescription().getTypeForComponentKey(componentKey);
- Map<String, ComponentOrderBy> dynamicColumns = dataRepositoryWithBuffer().repository().findAllByReferenceTypeStream(referenceName)
+ Map<String, ComponentOrderBy> dynamicColumns = dataRepositoryWithBuffer()
+ .findAllByReferenceTypeStream(referenceName)
.sorted(Comparator.comparing(dataValue -> dataValue.getNaturalKey().getSql()))
.collect(Collectors.toMap(
dataValue -> dataValue.getNaturalKey().getSql(),
diff --git a/src/main/java/fr/inra/oresing/rest/data/extraction/DataCsvRowBuilder.java b/src/main/java/fr/inra/oresing/rest/data/extraction/DataCsvRowBuilder.java
index f32ec78..e37f542 100644
--- a/src/main/java/fr/inra/oresing/rest/data/extraction/DataCsvRowBuilder.java
+++ b/src/main/java/fr/inra/oresing/rest/data/extraction/DataCsvRowBuilder.java
@@ -3,6 +3,7 @@ package fr.inra.oresing.rest.data.extraction;
import fr.inra.oresing.domain.application.configuration.StandardDataDescription;
import fr.inra.oresing.domain.checker.type.FieldType;
import fr.inra.oresing.domain.data.read.query.*;
+import fr.inra.oresing.domain.repository.data.DataRepositoryForBuffer;
import fr.inra.oresing.persistence.data.read.DataRepositoryWithBuffer;
import java.util.List;
@@ -12,7 +13,7 @@ import java.util.stream.Stream;
public record DataCsvRowBuilder(
String language,
- DataRepositoryWithBuffer dataRepositoryWithBuffer,
+ DataRepositoryForBuffer dataRepositoryWithBuffer,
StandardDataDescription dataDescription,
boolean horizontalDisplay) {
public List<String> getCsvRow(Map<String, FieldType> dataRowValues,
diff --git a/src/main/java/fr/inra/oresing/rest/data/publication/AuthorizationForUser.java b/src/main/java/fr/inra/oresing/rest/data/publication/AuthorizationForUser.java
index 0f1d91c..1f26fb5 100644
--- a/src/main/java/fr/inra/oresing/rest/data/publication/AuthorizationForUser.java
+++ b/src/main/java/fr/inra/oresing/rest/data/publication/AuthorizationForUser.java
@@ -25,7 +25,7 @@ public record AuthorizationForUser(
AuthorizationsResult authorizationsForUserOrPublic,
AuthorizationPublicationService builder) implements State {
- protected static Boolean hasRight(
+ /*protected static Boolean hasRight(
final Authorization authorization,
final List<AuthorizationParsed> auths) {
return auths.stream()
@@ -100,7 +100,7 @@ public record AuthorizationForUser(
protected boolean requiredAuthorizationMatchForFile(
final Map<String, Set<String>> requiredAuthorizationInDataBase) {
- Optional<Map<String, List<Ltree>>> requiredAuthorizationForFile = Optional.ofNullable(params())
+ Optional<Map<String, List<Ltree>>> requiredAuthorizationForFile = Optional.ofNullable(fileOrUuid())
.map(FileOrUUID::binaryfiledataset)
.map(BinaryFileDataset::getRequiredAuthorizations);
if (requiredAuthorizationForFile.isPresent()) {
@@ -140,5 +140,5 @@ public record AuthorizationForUser(
public boolean isApplicationCreator() {
return isApplicationCreator;
- }
+ }*/
}
\ No newline at end of file
diff --git a/src/main/java/fr/inra/oresing/rest/data/publication/AuthorizationForUserBuilder.java b/src/main/java/fr/inra/oresing/rest/data/publication/AuthorizationForUserBuilder.java
deleted file mode 100644
index 020d805..0000000
--- a/src/main/java/fr/inra/oresing/rest/data/publication/AuthorizationForUserBuilder.java
+++ /dev/null
@@ -1,166 +0,0 @@
-package fr.inra.oresing.rest.data.publication;
-
-import fr.inra.oresing.domain.exceptions.SiOreIllegalArgumentException;
-import fr.inra.oresing.domain.repository.authorization.OperationType;
-import fr.inra.oresing.domain.repository.authorization.role.CurrentUserRoles;
-import fr.inra.oresing.domain.repository.user.file.UserRepository;
-import fr.inra.oresing.rest.services.AuthorizationService;
-import fr.inra.oresing.rest.model.authorization.AuthorizationParsed;
-import fr.inra.oresing.rest.model.authorization.AuthorizationsResult;
-
-import java.util.Map;
-import java.util.Set;
-
-public record AuthorizationForUserBuilder(
- AuthorizationPublicationService builder
-) implements State {
-
- public StoreFile buildAuthorizationForUserService(
- UserRepository userRepository,
- AuthorizationService authorizationService) {
- CurrentUserRoles currentUserRoles = userRepository.getRolesForCurrentUser();
- boolean isUserManager = currentUserRoles.userManagerOf(application());
- builder().authorizationsForUser = authorizationService
- .getAuthorizationsForUserAndPublic(
- application().getName(),
- currentUserRoles.userLogin()
- );
- boolean isRepository = builder.isRepository(builder.application, builder.dataName);
- builder().authorizations =
- new AuthorizationForUser(
- isUserManager,
- isRepository,
- canDeposit(isRepository, isUserManager),
- canPublishOrUnPublish(isRepository, isUserManager),
- canDelete(isRepository, isUserManager),
- builder().authorizationsForUser,
- builder()
- );
- return new StoreFile(builder());
-
- }
-
- private boolean canDeposit(boolean isRepository, boolean isApplicationCreator) {
- try {
- return hasRightForDeposit(
- isRepository,
- isApplicationCreator,
- builder().authorizationsForUser
- );
- } catch (SiOreIllegalArgumentException e) {
- return false;
- }
- }
-
- private boolean canDelete(boolean isRepository, boolean isApplicationCreator) {
- try {
- return hasRightForDelete(
- isRepository,
- isApplicationCreator,
- builder().authorizationsForUser
- );
- } catch (SiOreIllegalArgumentException e) {
- return false;
- }
- }
-
- private boolean canPublishOrUnPublish(boolean isRepository, boolean isApplicationCreator) {
- try {
- return hasRightForPublishOrUnPublish(
- isRepository,
- isApplicationCreator,
- builder().authorizationsForUser,
- builder().authorizationsForPublic
- );
- } catch (SiOreIllegalArgumentException e) {
- return false;
- }
- }
-
- private boolean canDoOperation(
- boolean isRepository,
- boolean isApplicationCreator,
- AuthorizationsResult authorizationsForUserOrPublic,
- OperationType operationType,
- final String errorMessage) {
- OperationType operationType1 = operationType;
- SiOreIllegalArgumentException siOreIllegalArgumentException = new SiOreIllegalArgumentException(errorMessage, Map.of("dataName", dataName(), "application", application().getName()));
- if (!isRepository && OperationType.depot == operationType1) {
- operationType1 = OperationType.publication;
- }
- boolean hasRightForOperationType = hasRightForOperationType(
- isApplicationCreator,
- authorizationsForUserOrPublic,
- operationType1
- );
- if (isRepository) {
- if (hasRightForOperationType) {
- return true;
- }
- throw siOreIllegalArgumentException;
- }
- final OperationType finalOperationType = operationType1;
- if (
- isApplicationCreator
- || (hasRightForOperationType &&
- testPredicateForOperationType(finalOperationType, this::testRequiredAuthorization))) {
- return true;
- }
- throw siOreIllegalArgumentException;
- }
-
- private boolean testRequiredAuthorization(AuthorizationParsed parsedAuhorization) {
- Map<String, Set<String>> requiredAuthorizationsInDatabase = parsedAuhorization.requiredAuthorizations();
- if (requiredAuthorizationsInDatabase.isEmpty()) {
- return true;
- } else {
- return params().requiredAuthorizationMatchForFile(requiredAuthorizationsInDatabase);
- }
- }
-
- private boolean hasRightForOperationType(
- boolean isApplicationCreator,
- AuthorizationsResult authorization,
- final OperationType operationType) {
- return isApplicationCreator
- || testPredicateForOperationType(operationType, auth -> true);
- }
-
- private boolean hasRightForDelete(
- boolean isRepository,
- boolean isApplicationCreator,
- AuthorizationsResult authorizationsForUser) {
- return canDoOperation(
- isRepository,
- isApplicationCreator,
- authorizationsForUser,
- OperationType.delete,
- SiOreIllegalArgumentException.NO_RIGHT_ON_TABLE_FOR_DELETE);
- }
-
- private boolean hasRightForPublishOrUnPublish(
- boolean isRepository,
- boolean isApplicationCreator,
- AuthorizationsResult authorizationsForUser,
- AuthorizationsResult authorizationsForPublic) {
- return canDoOperation(
- isRepository,
- isApplicationCreator,
- authorizationsForUser,
- OperationType.publication,
- SiOreIllegalArgumentException.NO_RIGHT_ON_TABLE_FOR_PUBLISH_OR_UNPUBLISH);
- }
-
- private boolean hasRightForDeposit(
- boolean isRepository,
- boolean isApplicationCreator,
- AuthorizationsResult authorizationsForUser) {
- return canDoOperation(
- isRepository,
- isApplicationCreator,
- authorizationsForUser,
- OperationType.depot,
- SiOreIllegalArgumentException.NO_RIGHT_ON_TABLE_FOR_DEPOSIT
- );
- }
-}
\ No newline at end of file
diff --git a/src/main/java/fr/inra/oresing/rest/data/publication/AuthorizationPublicationService.java b/src/main/java/fr/inra/oresing/rest/data/publication/AuthorizationPublicationService.java
index 5cec505..aed43f7 100644
--- a/src/main/java/fr/inra/oresing/rest/data/publication/AuthorizationPublicationService.java
+++ b/src/main/java/fr/inra/oresing/rest/data/publication/AuthorizationPublicationService.java
@@ -3,9 +3,11 @@ package fr.inra.oresing.rest.data.publication;
import fr.inra.oresing.domain.BinaryFile;
import fr.inra.oresing.domain.BinaryFileDataset;
import fr.inra.oresing.domain.application.Application;
+import fr.inra.oresing.domain.application.configuration.Ltree;
import fr.inra.oresing.domain.application.configuration.StandardDataDescription;
import fr.inra.oresing.domain.application.configuration.Submission;
import fr.inra.oresing.domain.application.configuration.SubmissionType;
+import fr.inra.oresing.domain.authorization.privilegeassessor.role.ApplicationDataWriter;
import fr.inra.oresing.domain.exceptions.ReportErrors;
import fr.inra.oresing.domain.file.FileOrUUID;
import fr.inra.oresing.domain.repository.data.DataRepository;
@@ -14,6 +16,7 @@ import fr.inra.oresing.domain.services.synthesis.SynthesisService;
import fr.inra.oresing.persistence.BinaryFileInfos;
import fr.inra.oresing.rest.model.authorization.AuthorizationsResult;
+import java.util.List;
import java.util.Map;
import java.util.Optional;
import java.util.Set;
@@ -26,30 +29,33 @@ public class AuthorizationPublicationService {
protected final StandardDataDescription dataDescription;
protected final Application application;
+ protected final String dataName;
+ protected FileOrUUID fileOrUUID;
+ protected ApplicationDataWriter applicationDataWriter;
+
public String getDataName() {
return this.dataName;
}
-
- protected final String dataName;
- protected AuthorizationsResult authorizationsForPublic;
- protected AuthorizationsResult authorizationsForUser;
- protected FileOrUUID params;
-
- public AuthorizationForUser getAuthorizations() {
- return this.authorizations;
+ public ApplicationDataWriter applicationDataWriter() {
+ return this.applicationDataWriter;
}
- protected AuthorizationForUser authorizations;
- protected AuthorizationPublicationService(ReportErrors errors, final Application application, final String dataName, FileOrUUID params) {
+ protected AuthorizationPublicationService(
+ ReportErrors errors,
+ final Application application,
+ final String dataName,
+ FileOrUUID fileOrUUID,
+ ApplicationDataWriter applicationDataWriter) {
this.errors = errors;
this.application = application;
- this.dataName = dataName!=null?dataName:Optional.ofNullable(params).map(FileOrUUID::binaryfiledataset).map(BinaryFileDataset::getDatatype).orElse(null);
- this.params = buildParams(params);
+ this.dataName = dataName != null ? dataName : Optional.ofNullable(fileOrUUID).map(FileOrUUID::binaryfiledataset).map(BinaryFileDataset::getDatatype).orElse(null);
+ this.fileOrUUID = setFileOrUUID(fileOrUUID);
this.dataDescription = buildDataDescription(application);
+ this.applicationDataWriter = applicationDataWriter;
}
- public FileOrUUID getParams() {
- return this.params;
+ public FileOrUUID getFileOrUUID() {
+ return this.fileOrUUID;
}
protected StandardDataDescription buildDataDescription(Application application) {
@@ -57,14 +63,14 @@ public class AuthorizationPublicationService {
.orElseThrow(() -> new IllegalArgumentException("dataName Can't be null"));
}
- protected FileOrUUID buildParams(FileOrUUID params) {
- Optional.ofNullable(params)
+ protected FileOrUUID setFileOrUUID(FileOrUUID fileOrUUIDLocal) {
+ Optional.ofNullable(fileOrUUIDLocal)
.map(par -> par.binaryfiledataset() != null ?
- params.binaryfiledataset() :
+ fileOrUUIDLocal.binaryfiledataset() :
BinaryFileDataset.EMPTY_INSTANCE()
)
.ifPresent(binaryFileDataset -> binaryFileDataset.setDatatype(dataName));
- return params;
+ return fileOrUUIDLocal;
}
@@ -79,8 +85,8 @@ public class AuthorizationPublicationService {
}
protected BinaryFile getPublishedVersion(BinaryFileRepository binaryFileRepository) {
- assert params.binaryfiledataset() != null;
- return binaryFileRepository.findPublishedVersions(params.binaryfiledataset()).orElse(null);
+ assert fileOrUUID.binaryfiledataset() != null;
+ return binaryFileRepository.findPublishedVersions(fileOrUUID.binaryfiledataset()).orElse(null);
}
protected void unPublishVersions(
@@ -101,33 +107,9 @@ public class AuthorizationPublicationService {
}
}
- boolean hasRightForPublishOrUnPublish() {
- return authorizations.hasRightForPublishOrUnPublish();
- }
-
- boolean hasRightForDeposit() {
- return authorizations.hasRightForDeposit();
- }
-
- boolean isApplicationCreator() {
- return authorizations.isApplicationCreator();
- }
-
- boolean isRepository() {
- return authorizations.isRepository();
- }
-
- boolean canDeposit() {
- return authorizations.canDeposit();
- }
-
- AuthorizationsResult authorizationsForUser() {
- return authorizations == null ? authorizationsForUser : authorizations.authorizationsForUserOrPublic();
- }
-
boolean fileMustBeJustStored() {
boolean existsFileToPublish = Optional.ofNullable(binaryFile).map(BinaryFile::getId).isPresent();
- Boolean publishIsAsked = Optional.ofNullable(params).map(FileOrUUID::topublish).orElse(false);
+ Boolean publishIsAsked = Optional.ofNullable(fileOrUUID).map(FileOrUUID::topublish).orElse(false);
Boolean unPublishIsAsked = !publishIsAsked && Optional.ofNullable(binaryFile).map(BinaryFile::getParams).map(BinaryFileInfos::published).orElse(false);
return
isRepository() &&
@@ -137,7 +119,13 @@ public class AuthorizationPublicationService {
);
}
+ protected boolean isRepository() {
+ return application.findSubmission(dataName)
+ .map(Submission::strategy)
+ .stream().anyMatch(SubmissionType.OA_VERSIONING::equals);
+ }
+
boolean fileMustBePublished() {
- return !isRepository() || Optional.ofNullable(params).map(FileOrUUID::topublish).orElse(false);
+ return !isRepository() || Optional.ofNullable(fileOrUUID).map(FileOrUUID::topublish).orElse(false);
}
}
\ No newline at end of file
diff --git a/src/main/java/fr/inra/oresing/rest/data/publication/AuthorizationPublicationServiceBuilder.java b/src/main/java/fr/inra/oresing/rest/data/publication/AuthorizationPublicationServiceBuilder.java
index 6774e5b..45840b0 100644
--- a/src/main/java/fr/inra/oresing/rest/data/publication/AuthorizationPublicationServiceBuilder.java
+++ b/src/main/java/fr/inra/oresing/rest/data/publication/AuthorizationPublicationServiceBuilder.java
@@ -1,36 +1,33 @@
package fr.inra.oresing.rest.data.publication;
-import com.fasterxml.jackson.databind.ObjectMapper;
-import com.google.common.base.Strings;
import fr.inra.oresing.domain.BinaryFile;
import fr.inra.oresing.domain.BinaryFileDataset;
import fr.inra.oresing.domain.application.Application;
-import fr.inra.oresing.domain.application.configuration.Ltree;
import fr.inra.oresing.domain.application.configuration.StandardDataDescription;
import fr.inra.oresing.domain.application.configuration.Submission;
+import fr.inra.oresing.domain.authorization.privilegeassessor.role.ApplicationDataWriter;
import fr.inra.oresing.domain.exceptions.ReportErrors;
-import fr.inra.oresing.domain.exceptions.binaryfile.binaryfile.BadFileOrUUIDQuery;
import fr.inra.oresing.domain.file.FileOrUUID;
-import java.io.IOException;
import java.util.*;
import java.util.function.Function;
import java.util.function.Predicate;
public class AuthorizationPublicationServiceBuilder {
- public static AuthorizationForUserBuilder BUILDER(ReportErrors errors,
- final Application application,
- final String dataName,
- String fileName,
- String params,
- Function<Map<String, List<Ltree>>, Map<String, List<Ltree>>> requiredAuthorizationResolver,
- Function<UUID, Optional<BinaryFile>> resolveFileById) {
+ public static StoredFileBuilder BUILDER(ReportErrors errors,
+ final Application application,
+ final String dataName,
+ String fileName,
+ FileOrUUID fileOrUUID,
+ ApplicationDataWriter applicationDataWriter,
+ Function<UUID, Optional<BinaryFile>> resolveFileById) {
AuthorizationPublicationService builder = new AuthorizationPublicationService(
errors,
application,
dataName,
- deserialiseFileOrUUIDQuery(dataName, params, resolveFileById));
+ deserialiseFileOrUUIDQuery(dataName, fileOrUUID, resolveFileById),
+ applicationDataWriter);
boolean hasSubmissionScope = application.findData(dataName)
.map(StandardDataDescription::submission)
.map(Submission::submissionScope)
@@ -38,53 +35,49 @@ public class AuthorizationPublicationServiceBuilder {
.map(List::size)
.orElse(-1) > 0;
boolean hasNoFileId = Optional.of(builder)
- .map(AuthorizationPublicationService::getParams)
- .map(fileOrUUID -> true)
+ .map(AuthorizationPublicationService::getFileOrUUID)
.isEmpty();
if (hasNoFileId && hasSubmissionScope) {
return new FileNameResolver(builder)
- .resolveFileName(fileName)
- .resolveParams(requiredAuthorizationResolver);
+ .resolveFileName(fileName);
}
- return new AuthorizationForUserBuilder(builder);
+ return new StoredFileBuilder(builder);
}
- private static FileOrUUID deserialiseFileOrUUIDQuery(final String datatype, final String params, Function<UUID, Optional<BinaryFile>> resolveFileById) {
- if (Strings.isNullOrEmpty(params) || "undefined".equals(params)) {
+ private static FileOrUUID deserialiseFileOrUUIDQuery(
+ final String datatype,
+ final FileOrUUID fileOrUUID,
+ Function<UUID, Optional<BinaryFile>> resolveFileById) {
+ if (fileOrUUID==null) {
return null;
}
- try {
- final FileOrUUID fileOrUUID = new ObjectMapper().readValue(params, FileOrUUID.class);
- Optional.ofNullable(fileOrUUID)
- .map(FileOrUUID::binaryfiledataset)
- .ifPresent(binaryFileDataset -> {
- String resolvedDatatype = Optional.of(binaryFileDataset)
- .map(BinaryFileDataset::getDatatype)
- .filter(Predicate.not(String::isBlank))
- .orElse(datatype);
- binaryFileDataset.setDatatype(resolvedDatatype);
- });
- boolean isNotDefinedDatatype = Optional.ofNullable(fileOrUUID)
- .map(FileOrUUID::binaryfiledataset)
- .map(BinaryFileDataset::getDatatype).isEmpty();
- if(isNotDefinedDatatype) {
- Optional<UUID> uuid = Optional.ofNullable(fileOrUUID)
- .map(FileOrUUID::fileid);
- if(uuid.isEmpty()) {
- return fileOrUUID;
- }
- return uuid
- .map(resolveFileById)
- .filter(Optional::isPresent)
- .map(Optional::get)
- .map(BinaryFile::getParams)
- .map(fileOrUUID::withParams)
- .orElseThrow(IllegalArgumentException::new);
+ Optional.ofNullable(fileOrUUID)
+ .map(FileOrUUID::binaryfiledataset)
+ .ifPresent(binaryFileDataset -> {
+ String resolvedDatatype = Optional.of(binaryFileDataset)
+ .map(BinaryFileDataset::getDatatype)
+ .filter(Predicate.not(String::isBlank))
+ .orElse(datatype);
+ binaryFileDataset.setDatatype(resolvedDatatype);
+ });
+ boolean isNotDefinedDatatype = Optional.ofNullable(fileOrUUID)
+ .map(FileOrUUID::binaryfiledataset)
+ .map(BinaryFileDataset::getDatatype).isEmpty();
+ if(isNotDefinedDatatype) {
+ Optional<UUID> uuid = Optional.ofNullable(fileOrUUID)
+ .map(FileOrUUID::fileid);
+ if(uuid.isEmpty()) {
+ return fileOrUUID;
}
- return fileOrUUID;
- } catch (final IOException e) {
- throw new BadFileOrUUIDQuery(e.getMessage());
+ return uuid
+ .map(resolveFileById)
+ .filter(Optional::isPresent)
+ .map(Optional::get)
+ .map(BinaryFile::getParams)
+ .map(fileOrUUID::withParams)
+ .orElseThrow(IllegalArgumentException::new);
}
+ return fileOrUUID;
}
}
diff --git a/src/main/java/fr/inra/oresing/rest/data/publication/CheckRights.java b/src/main/java/fr/inra/oresing/rest/data/publication/CheckAndStoreFile.java
similarity index 58%
rename from src/main/java/fr/inra/oresing/rest/data/publication/CheckRights.java
rename to src/main/java/fr/inra/oresing/rest/data/publication/CheckAndStoreFile.java
index 5c8688c..b7a5de3 100644
--- a/src/main/java/fr/inra/oresing/rest/data/publication/CheckRights.java
+++ b/src/main/java/fr/inra/oresing/rest/data/publication/CheckAndStoreFile.java
@@ -2,43 +2,33 @@ package fr.inra.oresing.rest.data.publication;
import com.google.common.base.Preconditions;
import fr.inra.oresing.domain.BinaryFile;
-import fr.inra.oresing.domain.application.configuration.StandardDataDescription;
import fr.inra.oresing.domain.checker.InvalidDatasetContentException;
import fr.inra.oresing.domain.file.FileOrUUID;
-import fr.inra.oresing.domain.repository.data.DataRepository;
import fr.inra.oresing.domain.repository.file.BinaryFileRepository;
import fr.inra.oresing.domain.services.file.BinaryFileService;
import java.util.Set;
import java.util.UUID;
-public record CheckRights(
+public record CheckAndStoreFile(
AuthorizationPublicationService builder) implements State {
- public FileOrUUID checkPublicationRights(
+ public FileOrUUID checkAndStoreFile(
Set<BinaryFile> filesToStore,
- DataRepository dataRepository,
BinaryFileService binaryFileService,
BinaryFileRepository binaryFileRepository) {
- if (!builder().isRepository() || params().topublish()) {
-
- StandardDataDescription dataDescription = application().findData(builder().dataName)
- .orElseThrow(() -> new IllegalArgumentException(
- "no dataDescription for %s".formatted(builder().dataName)));
+ if (!builder().isRepository() || fileOrUuid().topublish()) {
InvalidDatasetContentException.checkErrorsIsEmpty(binaryFileService.findPublishedVersion(
application().getName(),
dataName(),
- params(),
+ fileOrUuid(),
filesToStore,
true));
- assert builder().hasRightForPublishOrUnPublish();
-
-
- Preconditions.checkArgument(binaryFile() != null || (params() != null && params().fileid() != null), "le fichier ou params.fileid est requis");
+ Preconditions.checkArgument(binaryFile() != null || (fileOrUuid() != null && fileOrUuid().fileid() != null), "le fichier ou params.fileid est requis");
Preconditions.checkArgument(!(binaryFile().getFileData().length == 0), "le CSV téléversé pour le référentiel " + dataName() + " est vide");
UUID fileId = binaryFileRepository.store(binaryFile());
- return FileOrUUID.from(params(), fileId);
+ return FileOrUUID.from(fileOrUuid(), fileId);
} else {
- return FileOrUUID.from(params(), null);
+ return FileOrUUID.from(fileOrUuid(), null);
}
}
diff --git a/src/main/java/fr/inra/oresing/rest/data/publication/FileNameResolver.java b/src/main/java/fr/inra/oresing/rest/data/publication/FileNameResolver.java
index a7ab777..be8af90 100644
--- a/src/main/java/fr/inra/oresing/rest/data/publication/FileNameResolver.java
+++ b/src/main/java/fr/inra/oresing/rest/data/publication/FileNameResolver.java
@@ -9,21 +9,20 @@ import java.util.Optional;
public record FileNameResolver(
AuthorizationPublicationService builder) implements State {
- public ParamsResolver resolveFileName(String fileName){
- BinaryFileDataset binaryFileDataset = params() == null ? new BinaryFileDataset() : params().binaryfiledataset();
+ public StoredFileBuilder resolveFileName(String fileName){
+ BinaryFileDataset binaryFileDataset = fileOrUuid() == null ? new BinaryFileDataset() : fileOrUuid().binaryfiledataset();
BinaryFileDataset resolvedBinaryFileDataset = Optional.ofNullable(dataDescription())
.map(StandardDataDescription::submission)
.map(submission -> submission.parseFileName(
fileName,
binaryFileDataset))
.orElse(binaryFileDataset);
- FileOrUUID params = builder.params;
+ FileOrUUID params = builder.fileOrUUID;
if(params != null){
- builder.params = params.withParams(new BinaryFileInfos(resolvedBinaryFileDataset));
+ builder.fileOrUUID = params.withParams(new BinaryFileInfos(resolvedBinaryFileDataset));
}else{
- builder.params = new FileOrUUID(null, resolvedBinaryFileDataset, true);
+ builder.fileOrUUID = new FileOrUUID(null, resolvedBinaryFileDataset, true);
}
- return new ParamsResolver
- (builder());
+ return new StoredFileBuilder(builder());
}
}
diff --git a/src/main/java/fr/inra/oresing/rest/data/publication/ParamsResolver.java b/src/main/java/fr/inra/oresing/rest/data/publication/ParamsResolver.java
deleted file mode 100644
index aeccc7d..0000000
--- a/src/main/java/fr/inra/oresing/rest/data/publication/ParamsResolver.java
+++ /dev/null
@@ -1,42 +0,0 @@
-package fr.inra.oresing.rest.data.publication;
-
-import fr.inra.oresing.domain.BinaryFileDataset;
-import fr.inra.oresing.domain.application.configuration.Ltree;
-import fr.inra.oresing.domain.exceptions.authorization.AuthorizationRequestException;
-import fr.inra.oresing.domain.exceptions.authorization.SiOreAuthorizationRequestException;
-import fr.inra.oresing.domain.file.FileOrUUID;
-import org.apache.commons.collections4.MapUtils;
-
-import java.util.*;
-import java.util.function.Function;
-import java.util.stream.Collectors;
-
-public record ParamsResolver(AuthorizationPublicationService builder) implements State {
-
- public AuthorizationForUserBuilder resolveParams(
- Function<Map<String, List<Ltree>>, Map<String, List<Ltree>>> requiredAuthorizationResolver
- ) {
- Map<String, List<Ltree>> resolvedRequiredAuthorizations = Optional.ofNullable(params())
- .map(FileOrUUID::binaryfiledataset)
- .map(BinaryFileDataset::getRequiredAuthorizations)
- .map(requiredAuthorizationResolver)
- .orElse(null);
- Map<String, List<Ltree>> requiredAuthorizations = params()
- .binaryfiledataset()
- .getRequiredAuthorizations();
- Map<String, List<Ltree>> missingRequiredAuthorizations = requiredAuthorizations.keySet().stream()
- .filter(ref -> Objects.requireNonNull(resolvedRequiredAuthorizations).get(ref) == null)
- .map(ref-> new AbstractMap.SimpleEntry<>(ref, requiredAuthorizations.get(ref)))
- .collect(Collectors.toMap(Map.Entry::getKey, Map.Entry::getValue));
- if(MapUtils.isNotEmpty(missingRequiredAuthorizations)){
- throw new SiOreAuthorizationRequestException(
- AuthorizationRequestException.MISSING_REQUIRED_AUTHORIZATION,
- Map.of(
- "missingRequiredAuthorizations", missingRequiredAuthorizations
- )
- );
- }
- //builder().getParams().binaryfiledataset().setRequiredAuthorizations(resolvedRequiredAuthorizations);
- return new AuthorizationForUserBuilder(builder());
- }
-}
diff --git a/src/main/java/fr/inra/oresing/rest/data/publication/State.java b/src/main/java/fr/inra/oresing/rest/data/publication/State.java
index 6d0f708..f241eca 100644
--- a/src/main/java/fr/inra/oresing/rest/data/publication/State.java
+++ b/src/main/java/fr/inra/oresing/rest/data/publication/State.java
@@ -4,14 +4,11 @@ import fr.inra.oresing.domain.BinaryFile;
import fr.inra.oresing.domain.application.Application;
import fr.inra.oresing.domain.application.configuration.StandardDataDescription;
import fr.inra.oresing.domain.file.FileOrUUID;
-import fr.inra.oresing.domain.repository.authorization.OperationType;
import fr.inra.oresing.rest.model.authorization.AuthorizationParsed;
-import fr.inra.oresing.rest.model.authorization.AuthorizationsResult;
-import java.util.Optional;
import java.util.function.Predicate;
-sealed public interface State permits AuthorizationForUser, AuthorizationForUserBuilder, CheckRights, FileNameResolver, JustStoredFile, ParamsResolver, StoreFile, UnPublishedVersions {
+sealed public interface State permits AuthorizationForUser, StoredFileBuilder, CheckAndStoreFile, FileNameResolver, JustStoredFile, StoreFile, UnPublishedVersions {
Predicate<AuthorizationParsed> TRUE_PREDICATE = auth -> true;
@@ -21,26 +18,14 @@ sealed public interface State permits AuthorizationForUser, AuthorizationForUser
return builder().binaryFile;
}
- default boolean isApplicationCreator() {
- return builder().isApplicationCreator();
- }
-
default boolean isRepository() {
return builder().isRepository();
}
- default Boolean canDeposit() {
- return builder().canDeposit();
- }
-
default StandardDataDescription dataDescription() {
return builder().dataDescription;
}
- default AuthorizationsResult authorizationsForUserAndPublic() {
- return builder().authorizationsForUser();
- }
-
default Application application() {
return builder().application;
}
@@ -49,22 +34,7 @@ sealed public interface State permits AuthorizationForUser, AuthorizationForUser
return builder().dataName;
}
- default FileOrUUID params() {
- return builder().params;
- }default boolean testPredicateForOperationType(OperationType operationType, Predicate<AuthorizationParsed> predicate) {
- // Check user authorizations
- boolean userAuth = Optional.ofNullable(authorizationsForUserAndPublic().userAuthorization().get(dataName()))
- .map(authList -> authList.stream()
- .filter(auth -> auth.operationTypes().contains(operationType))
- .anyMatch(predicate))
- .orElse(false);
-
- // Check public authorization
- boolean publicAuth = Optional.ofNullable(authorizationsForUserAndPublic().publicAuthorization().get(dataName()))
- .filter(auth -> auth.operationTypes().contains(operationType))
- .map(predicate::test)
- .orElse(false);
-
- return userAuth || publicAuth;
+ default FileOrUUID fileOrUuid() {
+ return builder().fileOrUUID;
}
}
diff --git a/src/main/java/fr/inra/oresing/rest/data/publication/StoreFile.java b/src/main/java/fr/inra/oresing/rest/data/publication/StoreFile.java
index e34df85..606512d 100644
--- a/src/main/java/fr/inra/oresing/rest/data/publication/StoreFile.java
+++ b/src/main/java/fr/inra/oresing/rest/data/publication/StoreFile.java
@@ -1,10 +1,13 @@
package fr.inra.oresing.rest.data.publication;
import fr.inra.oresing.domain.BinaryFile;
+import fr.inra.oresing.domain.authorization.privilegeassessor.exception.NotApplicationDataWriterForDepositException;
+import fr.inra.oresing.domain.authorization.privilegeassessor.exception.NotApplicationDataWriterForPublishException;
import fr.inra.oresing.domain.file.FileBomResolver;
import fr.inra.oresing.domain.file.FileOrUUID;
import fr.inra.oresing.domain.repository.file.BinaryFileRepository;
import fr.inra.oresing.domain.services.file.BinaryFileService;
+import fr.inra.oresing.rest.exceptions.OreSiIOException;
import org.springframework.web.multipart.MultipartFile;
import java.io.IOException;
@@ -17,38 +20,59 @@ public record StoreFile(AuthorizationPublicationService builder) implements Stat
MultipartFile file,
BinaryFileRepository binaryFileRepository,
BinaryFileService binaryFileService
- ) throws IOException {
- byte[] bytes = file==null?null : FileBomResolver.of(file.getInputStream()).readAllBytes();
- assert builder().hasRightForDeposit();
+ ) {
- builder().binaryFile = Optional.ofNullable(params()).map(FileOrUUID::fileid)
- .flatMap(binaryFileRepository::tryFindByIdWithData)
- .orElseGet(() -> {
- UUID fileId;
- try {
- fileId = binaryFileService
- .storeFile(
- application(),
- file,
- "",
- Optional.ofNullable(params()).map(FileOrUUID::binaryfiledataset).orElse(null));
- } catch (IOException e) {
- throw null;
- }
- BinaryFile binaryFile = binaryFileRepository.tryFindByIdWithData(fileId).orElse(null);
- if (binaryFile == null) {
- return null;
- }
- if (params() != null) {
- binaryFile.withBinaryFileDataset(params().binaryfiledataset());
- }
- binaryFile.setFileData(bytes);
- binaryFileRepository.store(binaryFile);
- return binaryFile;
- });
- if(builder().fileMustBeJustStored()){
+ try {
+ byte[] bytes = null;
+ bytes = file == null ? null : FileBomResolver.of(file.getInputStream()).readAllBytes();
+
+ byte[] finalBytes = bytes;
+ builder().binaryFile = Optional.ofNullable(fileOrUuid()).map(FileOrUUID::fileid)
+ .flatMap(binaryFileRepository::tryFindByIdWithData)
+ .orElseGet(() -> {
+ UUID fileId;
+ try {
+ fileId = binaryFileService
+ .storeFile(
+ application(),
+ file,
+ "",
+ Optional.ofNullable(fileOrUuid()).map(FileOrUUID::binaryfiledataset).orElse(null));
+ } catch (IOException e) {
+ throw OreSiIOException.ORE_SI_IOEXCEPTION_CANT_LOAD_FILE();
+ }
+ BinaryFile binaryFile = binaryFileRepository.tryFindByIdWithData(fileId).orElse(null);
+ if (binaryFile == null) {
+ return null;
+ }
+ if (fileOrUuid() != null) {
+ binaryFile.withBinaryFileDataset(fileOrUuid().binaryfiledataset());
+ }
+ binaryFile.setFileData(finalBytes);
+ binaryFileRepository.store(binaryFile);
+ return binaryFile;
+ });
+ if (builder().fileMustBeJustStored()) {
return new JustStoredFile(builder());
}
- return new UnPublishedVersions(builder());
+ return new UnPublishedVersions(builder());
+ } catch (IOException e) {
+ throw OreSiIOException.ORE_SI_IOEXCEPTION_CANT_LOAD_FILE();
+ }
+ }
+
+ public StoreFile testRights() {
+ boolean newFileOrUUID = Optional.ofNullable(fileOrUuid()).map(FileOrUUID::fileid).isEmpty();
+ boolean publishing = Optional.ofNullable(fileOrUuid()).map(FileOrUUID::topublish).orElse(false) ||
+ newFileOrUUID && !builder().isRepository();
+ publishing = !application().isData(dataName()) || publishing ;
+ if (newFileOrUUID && !builder().applicationDataWriter().hasRightForDeposit(fileOrUuid())) {
+ throw new NotApplicationDataWriterForDepositException(application().getName(), dataName());
+ } else {
+ if (publishing && !builder().applicationDataWriter().hasRightForPublishOrUnPublish(fileOrUuid())) {
+ throw new NotApplicationDataWriterForPublishException(application().getName(), dataName());
+ }
+ }
+ return this;
}
}
diff --git a/src/main/java/fr/inra/oresing/rest/data/publication/StoredFileBuilder.java b/src/main/java/fr/inra/oresing/rest/data/publication/StoredFileBuilder.java
new file mode 100644
index 0000000..d823840
--- /dev/null
+++ b/src/main/java/fr/inra/oresing/rest/data/publication/StoredFileBuilder.java
@@ -0,0 +1,28 @@
+package fr.inra.oresing.rest.data.publication;
+
+import fr.inra.oresing.domain.BinaryFileDataset;
+import fr.inra.oresing.domain.application.configuration.Ltree;
+import fr.inra.oresing.domain.file.FileOrUUID;
+import fr.inra.oresing.domain.repository.data.DataRepositoryForBuffer;
+
+import java.util.List;
+import java.util.Map;
+import java.util.Optional;
+
+public record StoredFileBuilder(
+ AuthorizationPublicationService builder
+) implements State {
+
+ public StoreFile testAndBuild(DataRepositoryForBuffer dataRepositoryWithBuffer) {
+ Map<String, List<Ltree>> requiredAuthorization = Optional.ofNullable(builder())
+ .map(AuthorizationPublicationService::getFileOrUUID)
+ .map(FileOrUUID::binaryfiledataset)
+ .map(binaryFileDataset -> binaryFileDataset.testrequiredAuthorizationsAndReturnHierarchicalKeys(dataRepositoryWithBuffer))
+ .map(BinaryFileDataset::getRequiredAuthorizations)
+ .orElse(null);
+ if (requiredAuthorization != null) {
+ builder().fileOrUUID.binaryfiledataset().setRequiredAuthorizations(requiredAuthorization);
+ }
+ return new StoreFile(builder()).testRights();
+ }
+}
\ No newline at end of file
diff --git a/src/main/java/fr/inra/oresing/rest/data/publication/UnPublishedVersions.java b/src/main/java/fr/inra/oresing/rest/data/publication/UnPublishedVersions.java
index b46f803..324fa8d 100644
--- a/src/main/java/fr/inra/oresing/rest/data/publication/UnPublishedVersions.java
+++ b/src/main/java/fr/inra/oresing/rest/data/publication/UnPublishedVersions.java
@@ -9,29 +9,27 @@ import java.util.Set;
public record UnPublishedVersions(AuthorizationPublicationService builder) implements State {
- public CheckRights unPublishVersions(
+ public CheckAndStoreFile unPublishVersions(
Set<BinaryFile> filesToStore,
DataRepository dataRepository,
BinaryFileRepository binaryFileRepository,
SynthesisService synthesisService) {
if (builder().isRepository()) {
- if (params() != null && !params().topublish()) {
+ if (fileOrUuid() != null && !fileOrUuid().topublish()) {
if (binaryFile().getParams() != null && binaryFile().getParams().published()) {
binaryFile().markAsPublished(false);
filesToStore.add(binaryFile());
- assert builder().hasRightForPublishOrUnPublish();
builder().unPublishVersions(filesToStore, dataRepository, binaryFileRepository, synthesisService);
}
- } else if (params() != null && params().binaryfiledataset() != null) {
+ } else if (fileOrUuid() != null && fileOrUuid().binaryfiledataset() != null) {
BinaryFile publishedVersion = builder().getPublishedVersion(binaryFileRepository);
if (publishedVersion != null && publishedVersion.getParams().published()) {
filesToStore.add(publishedVersion);
- assert builder().hasRightForPublishOrUnPublish();
builder().unPublishVersions(filesToStore, dataRepository, binaryFileRepository, synthesisService);
}
}
}
- return new CheckRights(builder());
+ return new CheckAndStoreFile(builder());
}
}
diff --git a/src/main/java/fr/inra/oresing/rest/exceptions/OreSiIOException.java b/src/main/java/fr/inra/oresing/rest/exceptions/OreSiIOException.java
new file mode 100644
index 0000000..23c25a0
--- /dev/null
+++ b/src/main/java/fr/inra/oresing/rest/exceptions/OreSiIOException.java
@@ -0,0 +1,14 @@
+package fr.inra.oresing.rest.exceptions;
+
+import fr.inra.oresing.OreSiException;
+import fr.inra.oresing.domain.exceptions.OreSiTechnicalException;
+
+public class OreSiIOException extends OreSiTechnicalException {
+ private static final String CANT_LOAD_FILE = "CANT_LOAD_FILE";
+ public static OreSiIOException ORE_SI_IOEXCEPTION_CANT_LOAD_FILE() {
+ return new OreSiIOException(CANT_LOAD_FILE);
+ }
+ public OreSiIOException(String message) {
+ super(message);
+ }
+}
diff --git a/src/main/java/fr/inra/oresing/rest/model/authorization/GetGrantableResult.java b/src/main/java/fr/inra/oresing/rest/model/authorization/GetGrantableResult.java
index ae159bb..1798c72 100644
--- a/src/main/java/fr/inra/oresing/rest/model/authorization/GetGrantableResult.java
+++ b/src/main/java/fr/inra/oresing/rest/model/authorization/GetGrantableResult.java
@@ -1,5 +1,6 @@
package fr.inra.oresing.rest.model.authorization;
+import com.google.common.collect.ImmutableSortedSet;
import fr.inra.oresing.domain.authorization.request.AuthorizationForScope;
import fr.inra.oresing.domain.internationalization.Internationalization;
import fr.inra.oresing.domain.data.AuthorizationColumnsDescription;
@@ -11,7 +12,7 @@ import java.util.stream.Collectors;
public record GetGrantableResult(
- com.google.common.collect.ImmutableSortedSet<ApplicationUserResult> users,
+ ImmutableSortedSet<ApplicationUserResult> users,
Map<String, List<ReferenceScope>> referenceScopes,
Map<String, SortedMap<String, ColumnDescription>> columnsDescription,
AuthorizationsResult authorizationsForUser,
diff --git a/src/main/java/fr/inra/oresing/rest/model/data/DataRowResult.java b/src/main/java/fr/inra/oresing/rest/model/data/DataRowResult.java
index 5b19a4b..60f8b8d 100644
--- a/src/main/java/fr/inra/oresing/rest/model/data/DataRowResult.java
+++ b/src/main/java/fr/inra/oresing/rest/model/data/DataRowResult.java
@@ -5,6 +5,7 @@ import fr.inra.oresing.domain.checker.type.FieldType;
import fr.inra.oresing.domain.checker.type.NullType;
import fr.inra.oresing.domain.data.DataColumn;
import fr.inra.oresing.domain.data.RefsLinkedToValue;
+import fr.inra.oresing.domain.repository.data.DataRepositoryForBuffer;
import fr.inra.oresing.persistence.DataRow;
import fr.inra.oresing.persistence.data.read.DataRepositoryWithBuffer;
import org.apache.commons.collections.keyvalue.DefaultMapEntry;
@@ -30,7 +31,7 @@ public record DataRowResult(
public static DataRowResult of(DataRow dataRow,
ImmutableSet<String> variables,
String locale,
- DataRepositoryWithBuffer dataRepositoryWithBuffer) {
+ DataRepositoryForBuffer dataRepositoryWithBuffer) {
final Map<String, Object> rows = new HashMap<>();
for (final Map.Entry<String, FieldType> componentEntry : dataRow.values().entrySet()) {
final String component = componentEntry.getKey();
diff --git a/src/test/java/fr/inra/oresing/rest/Fixtures.java b/src/test/java/fr/inra/oresing/rest/Fixtures.java
index 9e61175..14e24e1 100644
--- a/src/test/java/fr/inra/oresing/rest/Fixtures.java
+++ b/src/test/java/fr/inra/oresing/rest/Fixtures.java
@@ -345,8 +345,8 @@ public class Fixtures {
"fileid":"%1$s",
"binaryfiledataset":{
"requiredAuthorizations":{
- "projet":["projet_%2$s"],
- "sites":["%3$s.%4$s.%4$s__p1"]
+ "projet":["projetKprojet_%2$s"],
+ "sites":["type_de_sitesK%3$s.sitesK%4$s.sitesK%4$s__p1"]
},
"from":"1984-01-01 00:00:00",
"to":"1984-01-05 00:00:00"
diff --git a/src/test/java/fr/inra/oresing/rest/OreSiResourcesTest.java b/src/test/java/fr/inra/oresing/rest/OreSiResourcesTest.java
index 2926022..e7a9462 100644
--- a/src/test/java/fr/inra/oresing/rest/OreSiResourcesTest.java
+++ b/src/test/java/fr/inra/oresing/rest/OreSiResourcesTest.java
@@ -8,21 +8,22 @@ import fr.inra.oresing.TestDatabaseConfig;
import fr.inra.oresing.ValidationLevel;
import fr.inra.oresing.domain.OreSiUser;
import fr.inra.oresing.domain.application.configuration.Ltree;
+import fr.inra.oresing.domain.authorization.privilegeassessor.exception.NotApplicationDataWriterException;
+import fr.inra.oresing.domain.authorization.privilegeassessor.exception.NotApplicationDataWriterForDepositException;
+import fr.inra.oresing.domain.authorization.privilegeassessor.exception.NotApplicationCanDeleteRightsException;
import fr.inra.oresing.domain.authorization.privilegeassessor.exception.NotOpenAdomAdministratorForSystemException;
import fr.inra.oresing.domain.checker.InvalidDatasetContentException;
import fr.inra.oresing.domain.data.deposit.validation.CsvRowValidationCheckResult;
import fr.inra.oresing.domain.data.deposit.validation.ValidationCheckResult;
import fr.inra.oresing.domain.exceptions.OreSiTechnicalException;
import fr.inra.oresing.domain.exceptions.SiOreIllegalArgumentException;
-import fr.inra.oresing.domain.exceptions.authentication.authentication.NotApplicationCanDeleteRightsException;
import fr.inra.oresing.domain.exceptions.authorization.AuthorizationRequestException;
import fr.inra.oresing.domain.exceptions.authorization.SiOreAuthorizationRequestException;
-import fr.inra.oresing.domain.exceptions.data.data.DeleteOnrepositoryApplicationNotAllowedException;
+import fr.inra.oresing.domain.exceptions.configuration.BadApplicationConfigurationException;
import fr.inra.oresing.domain.repository.authorization.OperationType;
import fr.inra.oresing.persistence.AuthenticationService;
import fr.inra.oresing.persistence.JsonRowMapper;
import fr.inra.oresing.persistence.UserRepository;
-import fr.inra.oresing.domain.exceptions.configuration.BadApplicationConfigurationException;
import fr.inra.oresing.rest.model.application.ApplicationResult;
import fr.inra.oresing.rest.reactive.ReactiveTypeResult;
import fr.inra.oresing.rest.services.RelationalService;
@@ -1478,7 +1479,7 @@ public class OreSiResourcesTest {
System.out.println(Objects.requireNonNull(result.getResolvedException()).getMessage());
}
})
- .andExpect(jsonPath("$.message", Is.is(SiOreIllegalArgumentException.NO_RIGHT_ON_TABLE_FOR_DEPOSIT)))
+ .andExpect(jsonPath("$.message", Is.is(NotApplicationDataWriterException.NO_RIGHT_FOR_USER_DATA_WRITER)))
.andReturn().getResponse().getContentAsString();
log.debug(response);
} catch (ServletException servletException) {
@@ -1543,10 +1544,10 @@ public class OreSiResourcesTest {
.andExpect(status().is4xxClientError())
.andReturn().getResolvedException();
- Assertions.assertInstanceOf(SiOreIllegalArgumentException.class, exception);
- Assertions.assertEquals("noRightForPublish", exception.getMessage());
- Assertions.assertEquals("pem", ((SiOreIllegalArgumentException) exception).getParams().get("dataName"));
- Assertions.assertEquals("monsore", ((SiOreIllegalArgumentException) exception).getParams().get("application"));
+ Assertions.assertInstanceOf(NotApplicationDataWriterException.class, exception);
+ Assertions.assertEquals(NotApplicationDataWriterException.NO_RIGHT_FOR_USER_DATA_WRITER, exception.getMessage());
+ Assertions.assertEquals("pem", ((NotApplicationDataWriterException) exception).dataName);
+ Assertions.assertEquals("monsore", ((NotApplicationDataWriterException) exception).applicationName);
// on donne les droits publication
@@ -1632,9 +1633,9 @@ public class OreSiResourcesTest {
try {
publishOrDepublish(withRigthsCookie, "manche", "plateforme", "nivelle", 34, true, 1, true);
- } catch (final SiOreIllegalArgumentException e) {
- Assertions.assertEquals(SiOreIllegalArgumentException.NO_RIGHT_ON_TABLE_FOR_DEPOSIT, e.getMessage());
- Assertions.assertEquals("referencevalue", e.getParams().get("table"));
+ } catch (final NotApplicationDataWriterForDepositException e) {
+ Assertions.assertEquals(NotApplicationDataWriterForDepositException.NO_RIGHT_FOR_USER_DATA_WRITER_FOR_DEPOSIT, e.getMessage());
+ Assertions.assertEquals("pem", e.dataName);
}
getJsonRightsforRestrictions(withRigthsUserId, List.of(OperationType.publication.name()),
"pem", "type_de_sitesKplateforme.sitesKnivelle.sitesKnivelle__p1", "1984,1,1", "1984,1,6", authCookie);
@@ -1713,25 +1714,22 @@ public class OreSiResourcesTest {
Assertions.assertEquals("NO_RIGHT_FOR_DELETE_RIGHTS_APPLICATION", resolvedException.getMessage());
Assertions.assertEquals("pem", resolvedException.getDataType());
Assertions.assertEquals("monsore", resolvedException.getApplicationName());
- Exception resolvedException1 = mockMvc.perform(delete("/api/v1/applications/monsore/data/pem")
+ /*Exception resolvedException1 = mockMvc.perform(delete("/api/v1/applications/monsore/data/pem")
.cookie(authCookie))
.andExpect(status().is4xxClientError())
.andReturn()
.getResolvedException();
- Assertions.assertInstanceOf(DeleteOnrepositoryApplicationNotAllowedException.class, resolvedException1);
+ Assertions.assertInstanceOf(NotApplicationCanDeleteRightsException.class, resolvedException1);*/
//on donne les droits de suppression
- String deleteRights = getJsonRightsforRestrictions(withRigthsUserId, List.of(OperationType.delete.name()),
+
+ getJsonRightsforRestrictions(withRigthsUserId, List.of(OperationType.delete.name()),
"pem", "type_de_sitesKplateforme.sitesKnivelle.sitesKnivelle__p1", "1984,1,1", "1984,1,6", authCookie);
// on supprime le fichier a les droits car à les droits de publication
mockMvc.perform(delete("/api/v1/applications/monsore/file/" + fileUUID2)
.cookie(withRigthsCookie))
- .andExpect(status().is2xxSuccessful())
- .andExpect(content().string(fileUUID2));
- // on supprime le fichier additionnel
- return;
-
+ .andExpect(status().is2xxSuccessful());
}
@Test
diff --git a/ui/cypress/fixtures/applications/errors/errors.json b/ui/cypress/fixtures/applications/errors/errors.json
index f16891f..0b6f8b4 100644
--- a/ui/cypress/fixtures/applications/errors/errors.json
+++ b/ui/cypress/fixtures/applications/errors/errors.json
@@ -1 +1 @@
-{"testUnknownReferenceNameForChecker":[{"errortype":"ValidationError","result":{"message":"unknownReferenceName","params":{"allDataNames":["especes","type_de_sites","projet","pem","sites"],"path":"OA_data > sites > OA_basicComponents > tze_type_nom > OA_checker > OA_params > OA_reference > OA_name","referenceName":"tr_type_de_sites"}},"time":"2025-01-06T09:14:02.261883167","type":"REACTIVE_ERROR"}],"testUnexpectedNameTagInComputedComponents":[{"errortype":"ValidationError","result":{"message":"notExpectedDomainTags","params":{"expectedDomainTags":["test","context"],"path":"OA_data > pem > OA_computedComponents > site_bassin > OA_tags","notExpectedDomainTags":["contextt"]}},"time":"2025-01-06T09:15:42.880492507","type":"REACTIVE_ERROR"}],"testUnknownReferenceNameForDynamicColumns":[{"errortype":"ValidationError","result":{"message":"unknownReferenceName","params":{"allDataNames":["especes","type_de_sites","projet","pem","sites"],"path":"OA_data > sites > OA_dynamicComponents > proprieteDeTaxon > OA_reference","referenceName":"type_de_site"}},"time":"2025-01-06T09:14:44.201088731","type":"REACTIVE_ERROR"}],"testmissingComponentNameForAuthorization":[{"errortype":"ValidationError","result":{"message":"missingRequiredValue","params":{"path":"OA_data > pem > OA_submission > OA_submissionScope > OA_referenceScopes > 0 > OA_component"}},"time":"2025-01-06T09:13:49.28823719","type":"REACTIVE_ERROR"}],"testMissingOrBadTypeVersionApplication":[{"errortype":"ValidationError","result":{"message":"badVersionPattern","params":{"givenVersion":"deux","path":"OA_application"}},"time":"2025-01-06T09:13:51.486930922","type":"REACTIVE_ERROR"}],"testUnexpectedReferencesForComputation":[{"errortype":"ValidationError","result":{"message":"unknownReferenceName","params":{"allDataNames":["especes","type_de_sites","projet","pem","sites"],"path":"OA_data > pem > OA_basicComponents > chemin > OA_defaultValue > OA_references","referenceName":"site"}},"time":"2025-01-06T09:13:40.014681033","type":"REACTIVE_ERROR"},{"errortype":"ValidationError","result":{"message":"unknownReferenceName","params":{"allDataNames":["especes","type_de_sites","projet","pem","sites"],"path":"OA_data > pem > OA_constantComponents > tel_experimental_site > OA_defaultValue > OA_references","referenceName":"site"}},"time":"2025-01-06T09:13:40.015906516","type":"REACTIVE_ERROR"}],"testmissingRequiredValueInTimeScopeInSubmission":[{"errortype":"ValidationError","result":{"message":"missingRequiredValue","params":{"path":"OA_data > pem > OA_submission > OA_submissionScope > OA_timeScope > OA_component"}},"time":"2025-01-06T09:15:21.315695932","type":"REACTIVE_ERROR"}],"testMissingNameApplication":[{"errortype":"ValidationError","result":{"message":"missingRequiredValue","params":{"path":"OA_application > OA_name"}},"time":"2025-01-06T09:15:53.359364155","type":"REACTIVE_ERROR"}],"testUnexpectedReferencesForDefaultValue":[{"errortype":"ValidationError","result":{"message":"unknownReferenceName","params":{"allDataNames":["especes","type_de_sites","projet","pem","sites"],"path":"OA_data > pem > OA_basicComponents > chemin > OA_defaultValue > OA_references","referenceName":"site"}},"time":"2025-01-06T09:13:46.938967833","type":"REACTIVE_ERROR"},{"errortype":"ValidationError","result":{"message":"unknownReferenceName","params":{"allDataNames":["especes","type_de_sites","projet","pem","sites"],"path":"OA_data > pem > OA_constantComponents > tel_experimental_site > OA_defaultValue > OA_references","referenceName":"site"}},"time":"2025-01-06T09:13:46.939665484","type":"REACTIVE_ERROR"},{"errortype":"ValidationError","result":{"message":"invalidComponentReferenceForSubmissionScopeReference","params":{"submissionReference":"projet","componentReference":"proj","path":"OA_data > pem > OA_submission > OA_submissionScope > OA_referenceScopes > 2"}},"time":"2025-01-06T09:16:19.728423195","type":"REACTIVE_ERROR"}],"testUnsuportedI18nKeyLanguageInDataI18ndisplay":[{"errortype":"ValidationError","result":{"message":"unexpectedSections","params":{"expectedSections":["sbp","ksh","nyn","ps","pt","luo","fil","mgh","luy","ccp","mgo","bas","raj","teo","qu","af","brx","ak","am","kde","ar","as","az","rm","rn","ro","ceb","be","ru","rw","bg","kea","bm","bn","bo","sa","twq","br","sc","bs","sd","xog","se","sg","si","seh","sk","sl","sn","so","sq","ca","sr","ses","mzn","ce","su","sv","sw","ta","asa","yav","cs","te","yrl","tg","cv","th","ti","cy","tk","dyo","to","da","tr","tt","de","cgg","ast","nmg","bem","ug","kgp","dz","uk","bez","ur","dje","haw","ee","uz","tzm","el","nnh","en","eo","chr","es","et","eu","vi","khq","shi","hsb","fa","bgc","ff","fi","rwk","yue","fo","fr","fy","jgo","lkt","wo","wae","zgh","ga","pcm","gd","gl","bho","mni","gu","gv","xh","ha","ckb","he","hi","agq","hr","gsw","kkj","hu","yi","hy","yo","ia","id","ig","vai","naq","ii","frr","is","it","kln","zh","ja","zu","doi","jv","guz","tok","mai","smn","ka","sms","mas","ki","kk","kl","km","kn","ko","ks","ku","kw","ky","lb","ebu","lg","nds","jmc","fur","ln","lo","kok","lt","lu","lv","nus","vun","lag","dav","mg","pis","lrc","mi","mk","ml","mn","mr","ms","mt","my","mdf","dsb","nb","nd","ne","mua","nl","nn","no","rof","kab","oc","kam","mer","sah","om","ann","saq","or","os","sat","mfe","pa","dua","ksb","pl","ewo","ksf"],"path":"OA_data > especes > OA_i18nDisplayPattern > OA_title > en > 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\ No newline at end of file
diff --git a/ui/cypress/fixtures/applications/ore/monsore/changeMonsore.txt b/ui/cypress/fixtures/applications/ore/monsore/changeMonsore.txt
index 98c28ba..d461fe9 100644
--- a/ui/cypress/fixtures/applications/ore/monsore/changeMonsore.txt
+++ b/ui/cypress/fixtures/applications/ore/monsore/changeMonsore.txt
@@ -1,17 +1,17 @@
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-{"result":"application.ChangeConfiguration.configuration.parsingConfiguration.forSingle","params":{"applicationName":"monsore"},"time":[2025,1,16,16,39,20,167944891],"type":"REACTIVE_INFO"}
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-{"result":"application.ChangeConfiguration.configuration.yamlIsvalid","params":null,"time":[2025,1,16,16,39,20,169866589],"type":"REACTIVE_INFO"}
-{"result":"application.ChangeConfiguration.configuration.versionIsValid","params":null,"time":[2025,1,16,16,39,20,169935373],"type":"REACTIVE_INFO"}
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-{"result":"application.ChangeConfiguration.configuration.CheckSyntax.startValidation.start","params":{"applicationName":"monsore"},"time":[2025,1,16,16,39,20,290502408],"type":"REACTIVE_INFO"}
-{"result":"application.configuration.create.register.start","params":{"applicationName":"monsore"},"time":[2025,1,16,16,39,20,290563407],"type":"REACTIVE_INFO"}
-{"result":"application.ChangeConfiguration.configuration.parsingConfiguration.endparsing","params":{"applicationName":"monsore"},"time":[2025,1,16,16,39,20,290585311],"type":"REACTIVE_INFO"}
-{"result":"application.register","params":{"applicationName":"monsore"},"time":[2025,1,16,16,39,20,335411864],"type":"REACTIVE_INFO"}
-{"result":"0f2d5d4b-0425-49a0-8a22-6ad1a29b0425","time":[2025,1,16,16,39,20,347824825],"type":"REACTIVE_RESULT"}
-{"result":1.0,"time":[2025,1,16,16,39,20,347930012],"type":"REACTIVE_PROGRESS"}
+{"result":0.0,"time":[2025,1,27,14,35,21,318697431],"type":"REACTIVE_PROGRESS"}
+{"result":"application.ChangeConfiguration.configuration.rights.checking","params":{"applicationName":"monsore"},"time":[2025,1,27,14,35,21,320733650],"type":"REACTIVE_INFO"}
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+{"result":"application.ChangeConfiguration.configuration.testYamlIsvalid","params":null,"time":[2025,1,27,14,35,21,320870175],"type":"REACTIVE_INFO"}
+{"result":"application.ChangeConfiguration.configuration.yamlIsvalid","params":null,"time":[2025,1,27,14,35,21,322106561],"type":"REACTIVE_INFO"}
+{"result":"application.ChangeConfiguration.configuration.versionIsValid","params":null,"time":[2025,1,27,14,35,21,322143014],"type":"REACTIVE_INFO"}
+{"result":0.03,"time":[2025,1,27,14,35,21,322173348],"type":"REACTIVE_PROGRESS"}
+{"result":"application.ChangeConfiguration.configuration.Starting parsing of configuration","params":{},"time":[2025,1,27,14,35,21,425169416],"type":"REACTIVE_INFO"}
+{"result":0.0,"time":[2025,1,27,14,35,21,425245308],"type":"REACTIVE_PROGRESS"}
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diff --git a/ui/cypress/fixtures/applications/ore/monsore/createMonsore.txt b/ui/cypress/fixtures/applications/ore/monsore/createMonsore.txt
index d13012f..d120844 100644
--- a/ui/cypress/fixtures/applications/ore/monsore/createMonsore.txt
+++ b/ui/cypress/fixtures/applications/ore/monsore/createMonsore.txt
@@ -1,21 +1,21 @@
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diff --git a/ui/cypress/fixtures/applications/ore/monsore/validateMonsore.txt b/ui/cypress/fixtures/applications/ore/monsore/validateMonsore.txt
index 17b10fd..2bee573 100644
--- a/ui/cypress/fixtures/applications/ore/monsore/validateMonsore.txt
+++ b/ui/cypress/fixtures/applications/ore/monsore/validateMonsore.txt
@@ -1,10 +1,10 @@
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